class: center, middle, inverse, title-slide # Bases de datos:
ExPASy ### Licenciatura en Ciencias Genómicas, UNAM ### First version: 2021-08-22; Last update: 2021-10-12 --- <style type="text/css"> /* From https://github.com/yihui/xaringan/issues/147 */ .scroll-output { height: 80%; overflow-y: scroll; } /* https://stackoverflow.com/questions/50919104/horizontally-scrollable-output-on-xaringan-slides */ pre { max-width: 100%; overflow-x: scroll; } </style> <img src="imgs/clase_4/citlali_diagrama.png" width="800px" style="display: block; margin: auto;" /> --- <img src="imgs/clase_4/relaciones.png" width="600px" style="display: block; margin: auto;" /> --- Buscamos información de un gen que nos interesa ```python from Bio import Entrez Entrez.email = "emarquez@lcg.unam.mx" # Always tell NCBI who you are # Busco mi organismo y gen en la base de datos de proteínas handle = Entrez.esearch(db="protein", term="Aedes aegypti[Orgn] AND APY[Gene]") record = Entrez.read(handle) # ¿Cuántos resultados encontró? record["Count"] ``` ``` ## '1' ``` ```python record['IdList'] ``` ``` ## ['193806340'] ``` https://www.ncbi.nlm.nih.gov/protein/193806340 --- Extraemos la información ```python from Bio import Entrez, SeqIO # Extraer desde la base de datos de protein handle = Entrez.efetch(db="protein", id="193806340", rettype="gb", retmode="text") record = SeqIO.read(handle, "genbank") handle.close() # P50635.2 -> P50635 version 2 record.id ``` ``` ## 'P50635.2' ``` ```python record.annotations['db_source'] ``` ``` ## 'UniProtKB: locus APY_AEDAE, accession P50635; class: standard. extra accessions:Q176L2 created: Oct 1, 1996. sequence updated: Jul 1, 2008. annotation updated: Jun 2, 2021. xrefs: L12389.1, AAC37218.1, L41391.1, AAA99189.1, CH477386.1, EAT42070.1, XP_001651910.1 xrefs (non-sequence databases): SMR:P50635, STRING:7159.AAEL006347-PA, Allergome:3, Allergome:3539, GeneID:5567877, KEGG:aag:5567877, VEuPathDB:VectorBase:AAEL006347, eggNOG:KOG4419, HOGENOM:CLU_005854_7_1_1, InParanoid:P50635, OMA:GRTNCLQ, OrthoDB:484599at2759, PhylomeDB:P50635, Proteomes:UP000008820, GO:0005576, GO:0102490, GO:0005524, GO:0102485, GO:0102486, GO:0102491, GO:0102488, GO:0102487, GO:0102489, GO:0016788, GO:0046872, GO:0009166, Gene3D:3.60.21.10, Gene3D:3.90.780.10, InterPro:IPR008334, InterPro:IPR036907, InterPro:IPR006146, InterPro:IPR006179, InterPro:IPR004843, InterPro:IPR029052, PANTHER:PTHR11575, Pfam:PF02872, Pfam:PF00149, PRINTS:PR01607, SUPFAM:SSF55816, PROSITE:PS00785, PROSITE:PS00786' ``` --- ```python # Información en otras bases de datos (ej. UniProt) db_source = record.annotations['db_source'] apy_prot = record.annotations['accessions'] ``` https://www.uniprot.org/uniprot/P50635 <img src="imgs/clase_4/ncbi_info.png" width="600px" style="display: block; margin: auto;" /> --- O a partir de la base de datos de gene ```python from Bio import Entrez Entrez.email = "emarquez@lcg.unam.mx" # Busco la información *handle = Entrez.esearch(db="gene", term="Aedes aegypti[Orgn] AND apy[Gene]") record = Entrez.read(handle) # La obtengo *handle = Entrez.efetch(db="gene", id=record['IdList'][0], retmode="xml") record = Entrez.read(handle, "genbank") record[0]['Entrezgene_gene']['Gene-ref']['Gene-ref_syn'] ``` ``` ## ['APY', 'ADPase', 'APY_AEDAE', 'AAEL006347'] ``` ```python sinonimos = record[0]['Entrezgene_gene']['Gene-ref']['Gene-ref_syn'] [uniprot for uniprot in sinonimos if '_' in uniprot] ``` ``` ## ['APY_AEDAE'] ``` El parseo puede complicarse --- # <span style="color:Plum">Ejercicio 1</span> #### <span style="color:Orchid">Buscar el *accession* de la base de datos de UniProtKB del gen DEFA del mosquito <i>Aedes aegypti </i></span> ```{} de BIO importa Entrez Entrez.email = "emarquez@lcg.unam.mx" handle = Busco en la base de proteínas record = Leo mis resultados prot_id = Obtengo el ID que me ayudará a extraer la información handle = Extraigo un GenBank de la base de datos de proteínas record = Leo mis resultados db_source = Información de la proteía en otras bases de datos ``` --- <img src="imgs/clase_4/ncbi_swissprot.png" width="600px" style="display: block; margin: auto;" /> --- <img src="imgs/clase_4/uniprot_info.png" width="800px" style="display: block; margin: auto;" /> ### SwissProf file definition https://www.uniprot.org/docs/userman http://athina.biol.uoa.gr/FT/format_SwissProt.html https://swift.cmbi.umcn.nl/teach/SWISS/index.html#:~:text=SwissProt%20files%20are%20so%2Dcalled,what%20kind%20of%20data%20follow --- # ExPASy / UniProt .content-box-blue[El **paquete** `ExPASy`]: Nos permite **acceder** a los recursos de la base de datos `ExPASy` ------------- .content-box-blue[El **paquete** `SwissProt`]: Nos permite **leer** archivos de tipo `SwissProt` ------------- .content-box-yellow[`ExPASy.**get_sprot_raw()**`]: Nos permite **obtener** un archivo SwissProt crudo ------------- .content-box-yellow[`SwissProt.**read()** o SwissProt.**parse()**`]: Nos permite **leer** un archivo SwissProt crudo y lo convierte en un **objeto** `Bio.SwissProt.Record` --- # ExPASy / UniProt ** Accession number** Podemos extraer la información con el *accession number* ```python from Bio import ExPASy from Bio import SwissProt # Accession number que obtuvimos de efetch apy_prot ``` ``` ## ['P50635'] ``` ```python *handle = ExPASy.get_sprot_raw(apy_prot[0]) handle.url ``` ``` ## 'https://www.uniprot.org/uniprot/P50635.txt' ``` https://www.uniprot.org/uniprot/P50635 --- <img src="imgs/clase_4/uniprot_web.png" width="800px" style="display: block; margin: auto;" /> --- ```python from Bio import ExPASy from Bio import SwissProt apy_prot ``` ``` ## ['P50635'] ``` ```python *handle = ExPASy.get_sprot_raw(apy_prot[0]) *record = SwissProt.read(handle) record.__dict__.keys() ``` ``` ## dict_keys(['entry_name', 'data_class', 'molecule_type', 'sequence_length', 'accessions', 'created', 'sequence_update', 'annotation_update', 'description', 'gene_name', 'organism', 'organelle', 'organism_classification', 'taxonomy_id', 'host_organism', 'host_taxonomy_id', 'references', 'comments', 'cross_references', 'keywords', 'features', 'protein_existence', 'seqinfo', 'sequence']) ``` --- ```python pprint(record.__dict__) ``` ``` ## {'accessions': ['P50635', 'Q176L2'], ## 'annotation_update': ('02-JUN-2021', 148), ## 'comments': ['FUNCTION: Facilitates hematophagy by preventing ADP-dependent ' ## 'platelet aggregation in the host. May reduce probing time by ' ## 'facilitating the speed of locating blood.', ## "CATALYTIC ACTIVITY: Reaction=a ribonucleoside 5'-triphosphate + " ## "2 H2O = a ribonucleoside 5'-phosphate + 2 H(+) + 2 phosphate; " ## 'Xref=Rhea:RHEA:36795, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ' ## 'ChEBI:CHEBI:43474, ChEBI:CHEBI:58043, ChEBI:CHEBI:61557; ' ## 'EC=3.6.1.5;', ## 'COFACTOR: Name=a divalent metal cation; ' ## 'Xref=ChEBI:CHEBI:60240; Evidence={ECO:0000250};', ## 'SUBCELLULAR LOCATION: Secreted.', ## 'TISSUE SPECIFICITY: Salivary gland specific.', ## 'DEVELOPMENTAL STAGE: Not detectable in females on the first day ' ## 'after eclosion, but is detectable on the second day. It is ' ## 'maximally expressed by day 4.', ## 'PTM: The N-terminus is blocked.', ## 'ALLERGEN: Causes an allergic reaction in human.', ## "SIMILARITY: Belongs to the 5'-nucleotidase family. " ## '{ECO:0000305}.'], ## 'created': ('01-OCT-1996', 0), ## 'cross_references': [('EMBL', 'L12389', 'AAC37218.1', '-', 'mRNA'), ## ('EMBL', 'L41391', 'AAA99189.1', '-', 'Genomic_DNA'), ## ('EMBL', 'CH477386', 'EAT42070.1', '-', 'Genomic_DNA'), ## ('RefSeq', 'XP_001651910.1', 'XM_001651860.1'), ## ('SMR', 'P50635', '-'), ## ('STRING', '7159.AAEL006347-PA', '-'), ## ('Allergome', '3', 'Aed a 1'), ## ('Allergome', '3539', 'Aed a 1.0101'), ## ('GeneID', '5567877', '-'), ## ('KEGG', 'aag:5567877', '-'), ## ('VEuPathDB', 'VectorBase:AAEL006347', '-'), ## ('eggNOG', 'KOG4419', 'Eukaryota'), ## ('HOGENOM', 'CLU_005854_7_1_1', '-'), ## ('InParanoid', 'P50635', '-'), ## ('OMA', 'GRTNCLQ', '-'), ## ('OrthoDB', '484599at2759', '-'), ## ('PhylomeDB', 'P50635', '-'), ## ('Proteomes', 'UP000008820', 'Unassembled WGS sequence'), ## ('GO', ## 'GO:0005576', ## 'C:extracellular region', ## 'IEA:UniProtKB-SubCell'), ## ('GO', ## 'GO:0102490', ## 'F:8-oxo-dGTP phosphohydrolase activity', ## 'IEA:UniProtKB-EC'), ## ('GO', 'GO:0005524', 'F:ATP binding', 'IEA:UniProtKB-KW'), ## ('GO', ## 'GO:0102485', ## 'F:dATP phosphohydrolase activity', ## 'IEA:UniProtKB-EC'), ## ('GO', ## 'GO:0102486', ## 'F:dCTP phosphohydrolase activity', ## 'IEA:UniProtKB-EC'), ## ('GO', ## 'GO:0102491', ## 'F:dGTP phosphohydrolase activity', ## 'IEA:UniProtKB-EC'), ## ('GO', ## 'GO:0102488', ## 'F:dTTP phosphohydrolase activity', ## 'IEA:UniProtKB-EC'), ## ('GO', ## 'GO:0102487', ## 'F:dUTP phosphohydrolase activity', ## 'IEA:UniProtKB-EC'), ## ('GO', ## 'GO:0102489', ## 'F:GTP phosphohydrolase activity', ## 'IEA:UniProtKB-EC'), ## ('GO', ## 'GO:0016788', ## 'F:hydrolase activity, acting on ester bonds', ## 'IEA:InterPro'), ## ('GO', ## 'GO:0046872', ## 'F:metal ion binding', ## 'IEA:UniProtKB-KW'), ## ('GO', ## 'GO:0009166', ## 'P:nucleotide catabolic process', ## 'IEA:InterPro'), ## ('Gene3D', '3.60.21.10', '-', '1'), ## ('Gene3D', '3.90.780.10', '-', '1'), ## ('InterPro', 'IPR008334', "5'-Nucleotdase_C"), ## ('InterPro', 'IPR036907', "5'-Nucleotdase_C_sf"), ## ('InterPro', 'IPR006146', "5'-Nucleotdase_CS"), ## ('InterPro', 'IPR006179', '5_nucleotidase/apyrase'), ## ('InterPro', 'IPR004843', 'Calcineurin-like_PHP_ApaH'), ## ('InterPro', 'IPR029052', 'Metallo-depent_PP-like'), ## ('PANTHER', 'PTHR11575', 'PTHR11575', '1'), ## ('Pfam', 'PF02872', '5_nucleotid_C', '1'), ## ('Pfam', 'PF00149', 'Metallophos', '1'), ## ('PRINTS', 'PR01607', 'APYRASEFAMLY'), ## ('SUPFAM', 'SSF55816', 'SSF55816', '1'), ## ('PROSITE', 'PS00785', '5_NUCLEOTIDASE_1', '1'), ## ('PROSITE', 'PS00786', '5_NUCLEOTIDASE_2', '1')], ## 'data_class': 'Reviewed', ## 'description': 'RecName: Full=Apyrase; EC=3.6.1.5; AltName: ' ## 'Full=ATP-diphosphatase; Short=ADPase; AltName: ' ## 'Full=ATP-diphosphohydrolase; AltName: Full=Adenosine ' ## 'diphosphatase; AltName: Allergen=Aed a 1; Flags: Precursor;', ## 'entry_name': 'APY_AEDAE', ## 'features': [FeatureTable(FeatureLocation(ExactPosition(0), ExactPosition(24)), type='SIGNAL'), ## FeatureTable(FeatureLocation(ExactPosition(24), ExactPosition(562)), type='CHAIN', id='PRO_0000000039'), ## FeatureTable(FeatureLocation(ExactPosition(507), ExactPosition(514)), type='REGION'), ## FeatureTable(FeatureLocation(ExactPosition(46), ExactPosition(47)), type='METAL'), ## FeatureTable(FeatureLocation(ExactPosition(48), ExactPosition(49)), type='METAL'), ## FeatureTable(FeatureLocation(ExactPosition(97), ExactPosition(98)), type='METAL'), ## FeatureTable(FeatureLocation(ExactPosition(97), ExactPosition(98)), type='METAL'), ## FeatureTable(FeatureLocation(ExactPosition(129), ExactPosition(130)), type='METAL'), ## FeatureTable(FeatureLocation(ExactPosition(232), ExactPosition(233)), type='METAL'), ## FeatureTable(FeatureLocation(ExactPosition(256), ExactPosition(257)), type='METAL'), ## FeatureTable(FeatureLocation(ExactPosition(423), ExactPosition(424)), type='BINDING'), ## FeatureTable(FeatureLocation(ExactPosition(130), ExactPosition(131)), type='SITE'), ## FeatureTable(FeatureLocation(ExactPosition(133), ExactPosition(134)), type='SITE'), ## FeatureTable(FeatureLocation(ExactPosition(111), ExactPosition(112)), type='CARBOHYD'), ## FeatureTable(FeatureLocation(ExactPosition(389), ExactPosition(390)), type='CARBOHYD'), ## FeatureTable(FeatureLocation(ExactPosition(8), ExactPosition(9)), type='VARIANT'), ## FeatureTable(FeatureLocation(ExactPosition(29), ExactPosition(30)), type='VARIANT'), ## FeatureTable(FeatureLocation(ExactPosition(60), ExactPosition(61)), type='VARIANT'), ## FeatureTable(FeatureLocation(ExactPosition(223), ExactPosition(224)), type='VARIANT'), ## FeatureTable(FeatureLocation(ExactPosition(283), ExactPosition(284)), type='VARIANT'), ## FeatureTable(FeatureLocation(ExactPosition(313), ExactPosition(315)), type='VARIANT'), ## FeatureTable(FeatureLocation(ExactPosition(318), ExactPosition(320)), type='VARIANT'), ## FeatureTable(FeatureLocation(ExactPosition(346), ExactPosition(347)), type='VARIANT'), ## FeatureTable(FeatureLocation(ExactPosition(360), ExactPosition(361)), type='VARIANT'), ## FeatureTable(FeatureLocation(ExactPosition(471), ExactPosition(472)), type='VARIANT'), ## FeatureTable(FeatureLocation(ExactPosition(490), ExactPosition(491)), type='VARIANT'), ## FeatureTable(FeatureLocation(ExactPosition(497), ExactPosition(498)), type='VARIANT'), ## FeatureTable(FeatureLocation(ExactPosition(29), ExactPosition(30)), type='CONFLICT'), ## FeatureTable(FeatureLocation(ExactPosition(357), ExactPosition(358)), type='CONFLICT')], ## 'gene_name': 'Name=APY; ORFNames=AAEL006347;', ## 'host_organism': [], ## 'host_taxonomy_id': [], ## 'keywords': ['Allergen', ## 'ATP-binding', ## 'Direct protein sequencing', ## 'Glycoprotein', ## 'Hydrolase', ## 'Metal-binding', ## 'Nucleotide-binding', ## 'Reference proteome', ## 'Secreted', ## 'Signal'], ## 'molecule_type': None, ## 'organelle': '', ## 'organism': 'Aedes aegypti (Yellowfever mosquito) (Culex aegypti).', ## 'organism_classification': ['Eukaryota', ## 'Metazoa', ## 'Ecdysozoa', ## 'Arthropoda', ## 'Hexapoda', ## 'Insecta', ## 'Pterygota', ## 'Neoptera', ## 'Endopterygota', ## 'Diptera', ## 'Nematocera', ## 'Culicoidea', ## 'Culicidae', ## 'Culicinae', ## 'Aedini', ## 'Aedes', ## 'Stegomyia'], ## 'protein_existence': 1, ## 'references': [<Bio.SwissProt.Reference object at 0x000000002F515790>, ## <Bio.SwissProt.Reference object at 0x000000002F515AF0>, ## <Bio.SwissProt.Reference object at 0x000000002F5210D0>], ## 'seqinfo': (562, 62754, 'EEC3C6BE34235EFD'), ## 'sequence': 'MAGRPGYSEVIFLYVVSVAVIARATDNMPVNKDVSKLFPLTLIHINDLHARFEETNMKSNVCTQKDQCIAGIARVYQKIKDLLKEYESKNPIYLNAGDNFQGTLWYNLLRWNVTADFIKKLKPAAMTLGNHEFDHTPKGLAPYLAELNKEGIPTIVANLVMNNDPDLKSSKIPKSIKLTVGKRKIGIIGVLYDKTHEIAQTGKVTLSNAVEAVRREAAALKKDNIDIIVVLSHCSYEEDKKIAAEAGDDIDVIVGAHSHSFLYSPDSKQPHDPKDKVEGPYPTLVESKNKRKIPIVQAKSFGKYVGRLTLYFDEEGEVKNWEGYPVFIDHKVQQDPQILKDLVPWRAKVEAIGSTVVGETMIELDRDSCRDQECTLGVLYADGFADQYTNDTFRPFAIIQAGNFRNPIKVGKITNGDIIEAAPFGSTADLIRLKGADIWDVAEHSFALDDEGRTNCLQVSGLRIVIDISKPVRSRVKKIEVMDYTNPKSDKLKPLDKEAEYYIVVPSYLADGKDGFSAMKRATARRTGPLDSDVFKNYVEKIKKVDNLKLGRVIVCKGSKCT', ## 'sequence_length': 562, ## 'sequence_update': ('01-JUL-2008', 2), ## 'taxonomy_id': ['7159']} ``` --- # ExPASy / UniProt ** Entry name/locus** También podemos acceder con el *entry name* o el *locus* ```python # Información extraída con efetch db_source.split(';')[0] ``` ``` ## 'UniProtKB: locus APY_AEDAE, accession P50635' ``` ```python *handle = ExPASy.get_sprot_raw('APY_AEDAE') *record = SwissProt.read(handle) print (record.entry_name) ``` ``` ## APY_AEDAE ``` ```python print (record.sequence_length) ``` ``` ## 562 ``` --- ```python print (record.data_class) ``` ``` ## Reviewed ``` ```python print (record.organism) ``` ``` ## Aedes aegypti (Yellowfever mosquito) (Culex aegypti). ``` ```python print (record.sequence[:10]) # String, NO Bio.Seq ``` ``` ## MAGRPGYSEV ``` .content-box-red[El **objeto** `Bio.SwissProt.Record` puede convertirse en `Bio.SeqRecord`] --- # <span style="color:Plum">Ejercicio 2</span> #### <span style="color:Orchid">Con el *accession* de la base de datos de UniProtKB del gen DEFA del mosquito <i>Aedes aegypti </i>, obtener el archivo de UniProt e imprimir:<br>⦿ Fecha de creación<br>⦿Cuándo actualizaron su anotación<br>⦿ID de taxonomía<br> </span> ```{} from Bio import ExPASy from Bio import SwissProt handle = Busco en la base de proteínas record = Leo mis resultados prot_id = Obtengo el ID que me ayudará a extraer la información handle = Extraigo un GenBank de la base de datos de proteínas record = Leo mis resultados db_source = Información de la proteía en otras bases de datos ``` --- # Desde un archivo descargado con un solo record ``` ## ID CHS3_BROFI Reviewed; 394 AA. ## AC O23729; ## DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. ## DT 01-JAN-1998, sequence version 1. ## DT 11-DEC-2019, entry version 74. ## DE RecName: Full=Chalcone synthase 3; ## DE EC=2.3.1.74; ## DE AltName: Full=Naringenin-chalcone synthase 3; ## GN Name=CHS3; ## OS Bromheadia finlaysoniana (Orchid). ## OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ## OC Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae; ## OC Epidendroideae; Vandeae; Adrorhizinae; Bromheadia. ## OX NCBI_TaxID=41205; ## RN [1] ## RP NUCLEOTIDE SEQUENCE [MRNA]. ## RC TISSUE=Flower; ``` --- # Desde un archivo descargado con un solo record ```python *handle = open("./files/clase_4/O23729.txt") *record = SwissProt.read(handle) record.gene_name ``` ``` ## 'Name=CHS3;' ``` ```python record.sequence ``` ``` ## 'MAPAMEEIRQAQRAEGPAAVLAIGTSTPPNALYQADYPDYYFRITKSEHLTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNICAFMAPSLDARQDIVVTEVPKLAKEAAVRAIKEWGHPKSRITHLIFCTTSGIDMPGADYQLTRLLGLRPSVNRFMLYQQGCFAGGTVLRLAKDLAENNAGARVLVVCSEITAVTFRGPSESHLDSLVGQALFGDGAAAIIVGSDPDSATERPLFQLVSASQTILPESEGAIDGHLREIGLTFHLLKDVPGLISKNIQKCLLDAFKPLGVHDWNSIFWIAHPGGPAILDQVEIKLGLKAEKLAASRNVLAEYGNMSSACVLFILDEMRRRSAEAGQATTGEGLEWGVLFGFGPGLTVETIVLRSVPIAGAE' ``` ```python record.__dict__.keys() ``` ``` ## dict_keys(['entry_name', 'data_class', 'molecule_type', 'sequence_length', 'accessions', 'created', 'sequence_update', 'annotation_update', 'description', 'gene_name', 'organism', 'organelle', 'organism_classification', 'taxonomy_id', 'host_organism', 'host_taxonomy_id', 'references', 'comments', 'cross_references', 'keywords', 'features', 'protein_existence', 'seqinfo', 'sequence']) ``` --- # Multiples record ``` ## ID 001R_FRG3G Reviewed; 256 AA. ## AC Q6GZX4; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## . ## . ## . ## KCINRASDPV YQKVKTLHAY PDQCWYVPCA ADVGELKMGT QRDTPTNCPT QVCQIVFNML ## DDGSVTMDDV KNTINCDFSK YVPPPPPPKP TPPTPPTPPT PPTPPTPPTP PTPRPVHNRK ## VMFFVAGAVL VAILISTVRW ## // ## ID 002R_IIV3 Reviewed; 458 AA. ## AC Q197F8; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## . ## . ## . ## GEEDSSDEDD PTWAPDSDDS DWETETEEEP SVAARILEKG KLTITNLMKS LGFKPKPKKI ## QSIDRYFCSL DSNYNSEDED FEYDSDSEDD DSDSEDDC ## // ## ID 003L_IIV3 Reviewed; 156 AA. ## AC Q197F7; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 23. ## DE RecName: Full=Uncharacterized protein 003L; ## GN ORFNames=IIV3-003L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82033.1; -; Genomic_DNA. ## DR RefSeq; YP_654575.1; NC_008187.1. ## DR GeneID; 4156252; -. ## DR KEGG; vg:4156252; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..156 ## FT /note="Uncharacterized protein 003L" ## FT /id="PRO_0000377939" ## SQ SEQUENCE 156 AA; 17043 MW; D48A43940FF8C815 CRC64; ## MYQAINPCPQ SWYGSPQLER EIVCKMSGAP HYPNYYPVHP NALGGAWFDT SLNARSLTTT ## PSLTTCTPPS LAACTPPTSL GMVDSPPHIN PPRRIGTLCF DFGSAKSPQR CECVASDRPS ## TTSNTAPDTY RLLITNSKTR KNNYGTCRLE PLTYGI ## // ## ID 003R_FRG3G Reviewed; 438 AA. ## AC Q6GZX2; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 36. ## DE RecName: Full=Uncharacterized protein 3R; ## DE Flags: Precursor; ## GN ORFNames=FV3-003R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09662.1; -; Genomic_DNA. ## DR RefSeq; YP_031581.1; NC_005946.1. ## DR GeneID; 2947775; -. ## DR KEGG; vg:2947775; -. ## DR Proteomes; UP000008770; Genome. ## PE 3: Inferred from homology; ## KW Reference proteome; Signal. ## FT SIGNAL 1..32 ## FT /evidence="ECO:0000255" ## FT CHAIN 33..438 ## FT /note="Uncharacterized protein 3R" ## FT /id="PRO_0000410532" ## SQ SEQUENCE 438 AA; 48297 MW; 075C8FA17B3C5C56 CRC64; ## MARPLLGKTS SVRRRLESLS ACSIFFFLRK FCQKMASLVF LNSPVYQMSN ILLTERRQVD ## RAMGGSDDDG VMVVALSPSD FKTVLGSALL AVERDMVHVV PKYLQTPGIL HDMLVLLTPI ## FGEALSVDMS GATDVMVQQI ATAGFVDVDP LHSSVSWKDN VSCPVALLAV SNAVRTMMGQ ## PCQVTLIIDV GTQNILRDLV NLPVEMSGDL QVMAYTKDPL GKVPAVGVSV FDSGSVQKGD ## AHSVGAPDGL VSFHTHPVSS AVELNYHAGW PSNVDMSSLL TMKNLMHVVV AEEGLWTMAR ## TLSMQRLTKV LTDAEKDVMR AAAFNLFLPL NELRVMGTKD SNNKSLKTYF EVFETFTIGA ## LMKHSGVTPT AFVDRRWLDN TIYHMGFIPW GRDMRFVVEY DLDGTNPFLN TVPTLMSVKR ## KAKIQEMFDN MVSRMVTS ## // ## ID 004R_FRG3G Reviewed; 60 AA. ## AC Q6GZX1; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 34. ## DE RecName: Full=Uncharacterized protein 004R; ## GN ORFNames=FV3-004R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## CC -!- SUBCELLULAR LOCATION: Host membrane {ECO:0000305}; Single-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; AY548484; AAT09663.1; -; Genomic_DNA. ## DR RefSeq; YP_031582.1; NC_005946.1. ## DR GeneID; 2947776; -. ## DR KEGG; vg:2947776; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Host membrane; Membrane; Reference proteome; Transmembrane; ## KW Transmembrane helix. ## FT CHAIN 1..60 ## FT /note="Uncharacterized protein 004R" ## FT /id="PRO_0000410528" ## FT TRANSMEM 14..34 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 60 AA; 6514 MW; 12F072778EE6DFE4 CRC64; ## MNAKYDTDQG VGRMLFLGTI GLAVVVGGLM AYGYYYDGKT PSSGTSFHTA SPSFSSRYRY ## // ## ID 005L_IIV3 Reviewed; 217 AA. ## AC Q197F5; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 29. ## DE RecName: Full=Uncharacterized protein 005L; ## DE Flags: Precursor; ## GN ORFNames=IIV3-005L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82035.1; -; Genomic_DNA. ## DR RefSeq; YP_654577.1; NC_008187.1. ## DR SMR; Q197F5; -. ## DR GeneID; 4156254; -. ## DR KEGG; vg:4156254; -. ## DR Proteomes; UP000001358; Genome. ## PE 3: Inferred from homology; ## KW Reference proteome; Signal. ## FT SIGNAL 1..24 ## FT /evidence="ECO:0000255" ## FT CHAIN 25..217 ## FT /note="Uncharacterized protein 005L" ## FT /id="PRO_0000377940" ## SQ SEQUENCE 217 AA; 23854 MW; 6DBE65967D7EEBD5 CRC64; ## MRYTVLIALQ GALLLLLLID DGQGQSPYPY PGMPCNSSRQ CGLGTCVHSR CAHCSSDGTL ## CSPEDPTMVW PCCPESSCQL VVGLPSLVNH YNCLPNQCTD SSQCPGGFGC MTRRSKCELC ## KADGEACNSP YLDWRKDKEC CSGYCHTEAR GLEGVCIDPK KIFCTPKNPW QLAPYPPSYH ## QPTTLRPPTS LYDSWLMSGF LVKSTTAPST QEEEDDY ## // ## ID 005R_FRG3G Reviewed; 204 AA. ## AC Q6GZX0; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 43. ## DE RecName: Full=Uncharacterized protein 005R; ## GN ORFNames=FV3-005R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09664.1; -; Genomic_DNA. ## DR RefSeq; YP_031583.1; NC_005946.1. ## DR SMR; Q6GZX0; -. ## DR PRIDE; Q6GZX0; -. ## DR GeneID; 2947777; -. ## DR KEGG; vg:2947777; -. ## DR Proteomes; UP000008770; Genome. ## DR InterPro; IPR003360; US22-like. ## DR Pfam; PF02393; US22; 1. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..204 ## FT /note="Uncharacterized protein 005R" ## FT /id="PRO_0000410513" ## SQ SEQUENCE 204 AA; 23418 MW; 13AC9A179015F769 CRC64; ## MQNPLPEVMS PEHDKRTTTP MSKEANKFIR ELDKKPGDLA VVSDFVKRNT GKRLPIGKRS ## NLYVRICDLS GTIYMGETFI LESWEELYLP EPTKMEVLGT LESCCGIPPF PEWIVMVGED ## QCVYAYGDEE ILLFAYSVKQ LVEEGIQETG ISYKYPDDIS DVDEEVLQQD EEIQKIRKKT ## REFVDKDAQE FQDFLNSLDA SLLS ## // ## ID 006L_IIV6 Reviewed; 352 AA. ## AC Q91G88; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-DEC-2001, sequence version 1. ## DT 12-AUG-2020, entry version 50. ## DE RecName: Full=Putative KilA-N domain-containing protein 006L; ## GN ORFNames=IIV6-006L; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## CC -!- SIMILARITY: Belongs to the IIV-6 006L/238R/313L/468L family. ## CC {ECO:0000305}. ## DR EMBL; AF303741; AAK81943.1; -; Genomic_DNA. ## DR RefSeq; NP_149469.1; NC_003038.1. ## DR SMR; Q91G88; -. ## DR PRIDE; Q91G88; -. ## DR GeneID; 1733056; -. ## DR KEGG; vg:1733056; -. ## DR Proteomes; UP000001359; Genome. ## DR InterPro; IPR022549; DUF3627. ## DR InterPro; IPR017880; KilA_N. ## DR InterPro; IPR018004; KilA_N/APSES_HTH. ## DR Pfam; PF12299; DUF3627; 1. ## DR Pfam; PF04383; KilA-N; 1. ## DR PROSITE; PS51301; KILA_N; 1. ## PE 3: Inferred from homology; ## KW Coiled coil; Reference proteome. ## FT CHAIN 1..352 ## FT /note="Putative KilA-N domain-containing protein 006L" ## FT /id="PRO_0000377958" ## FT DOMAIN 15..123 ## FT /note="KilA-N" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00631" ## FT COILED 129..236 ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 352 AA; 41658 MW; 3519C5E9E45A8AB6 CRC64; ## MDSLNEVCYE QIKGTFYKGL FGDFPLIVDK KTGCFNATKL CVLGGKRFVD WNKTLRSKKL ## IQYYETRCDI KTESLLYEIK GDNNDEITKQ ITGTYLPKEF ILDIASWISV EFYDKCNNII ## INYFVNEYKT MDKKTLQSKI NEVEEKMQKL LNEKEEELQE KNDKIDELIL FSKRMEEDRK ## KDREMMIKQE KMLRELGIHL EDVSSQNNEL IEKVDEQVEQ NAVLNFKIDN IQNKLEIAVE ## DRAPQPKQNL KRERFILLKR NDDYYPYYTI RAQDINARSA LKRQKNLYNE VSVLLDLTCH ## PNSKTLYVRV KDELKQKGVV FNLCKVSISN SKINEEELIK AMETINDEKR DV ## // ## ID 006R_FRG3G Reviewed; 75 AA. ## AC Q6GZW9; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Uncharacterized protein 006R; ## GN ORFNames=FV3-006R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09665.1; -; Genomic_DNA. ## DR RefSeq; YP_031584.1; NC_005946.1. ## DR SMR; Q6GZW9; -. ## DR GeneID; 2947778; -. ## DR KEGG; vg:2947778; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..75 ## FT /note="Uncharacterized protein 006R" ## FT /id="PRO_0000410535" ## SQ SEQUENCE 75 AA; 8848 MW; DC926963B93EDF36 CRC64; ## MYKMYFLKDQ KFSLSGTIRI NDKTQSEYGS VWCPGLSITG LHHDAIDHNM FEEMETEIIE ## YLGPWVQAEY RRIKG ## // ## ID 007R_FRG3G Reviewed; 128 AA. ## AC Q6GZW8; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 30. ## DE RecName: Full=Uncharacterized protein 007R; ## GN ORFNames=FV3-007R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09666.1; -; Genomic_DNA. ## DR RefSeq; YP_031585.1; NC_005946.1. ## DR PRIDE; Q6GZW8; -. ## DR GeneID; 2947779; -. ## DR KEGG; vg:2947779; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..128 ## FT /note="Uncharacterized protein 007R" ## FT /id="PRO_0000410565" ## SQ SEQUENCE 128 AA; 13707 MW; 9DD5475975A4405F CRC64; ## MRSIKPLRCC NAHGRHVSQE YGRCTLLLFR EKLFLQTGLV CNKQCNAPNN DGAESKHHGI ## HHGSRGALAL RGAGVHLLAS AALGPRVLAG LVPTGRSVQG SVGQCGRVAQ IGRARDVAAR ## KQESYCEK ## // ## ID 007R_IIV3 Reviewed; 447 AA. ## AC Q197F3; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 26. ## DE RecName: Full=Uncharacterized protein 007R; ## GN ORFNames=IIV3-007R; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82037.1; -; Genomic_DNA. ## DR RefSeq; YP_654579.1; NC_008187.1. ## DR GeneID; 4156256; -. ## DR KEGG; vg:4156256; -. ## DR Proteomes; UP000001358; Genome. ## DR InterPro; IPR024416; DUF2738. ## DR Pfam; PF10927; DUF2738; 1. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..447 ## FT /note="Uncharacterized protein 007R" ## FT /id="PRO_0000377941" ## SQ SEQUENCE 447 AA; 52027 MW; BE02EE24D34C1B46 CRC64; ## MEAKNITIDN TTYNFFKFYN INQPLTNLKY LNSERLCFSN AVMGKIVDDA STITITYHRV ## YFGISGPKPR QVADLGEYYD VNELLNYDTY TKTQEFAQKY NSLVKPTIDA KNWSGNELVL ## LVGNEWYCKT FGKAGSKNVF LYNMIPTIYR DEPQHQEQIL KKFMFFNATK NVEQNPNFLD ## NVPEEYYHLL LPKSWVEKNL SDKYRKIMET EHKPLVFSCE PAFSFGLCRN TQDKNESYQL ## SLCLYEREKP RDAEIVWAAK YDELAAMVRD YLKKTPEFKK YRSFISCMKG LSWKNNEIGD ## KDGPKLYPKV IFNRKKGEFV TIFTKDDDVE PETIEDPRTI LDRRCVVQAA LRLESVFVHN ## KVAIQLRIND VLISEWKEAS SKPQPLILRR HRFTKPSSSV AKSTSPSLRN SGSDESDLNQ ## SDSDKEDERV VPVPKTKRIV KTVKLPN ## // ## ID 008L_IIV3 Reviewed; 347 AA. ## AC Q197F2; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 21. ## DE RecName: Full=Uncharacterized protein 008L; ## GN ORFNames=IIV3-008L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82038.1; -; Genomic_DNA. ## DR RefSeq; YP_654580.1; NC_008187.1. ## DR GeneID; 4156257; -. ## DR KEGG; vg:4156257; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..347 ## FT /note="Uncharacterized protein 008L" ## FT /id="PRO_0000377800" ## SQ SEQUENCE 347 AA; 37905 MW; 5668FE61005BBE9D CRC64; ## MSFKVYDPIA ELIATQFPTS NPDLQIINND VLVVSPHKIT LPMGPQNAGD VTNKAYVDQA ## VMSAAVPVAS STTVGTIQMA GDLEGSSGTN PIIAANKITL NKLQKIGPKM VIGNPNSDWN ## NTQEIELDSS FRIVDNRLNA GIVPISSTDP NKSNTVIPAP QQNGLFYLDS SGRVWVWAEH ## YYKCITPSRY ISKWMGVGDF QELTVGQSVM WDSGRPSIET VSTQGLEVEW ISSTNFTLSS ## LYLIPIVVKV TICIPLLGQP DQMAKFVLYS VSSAQQPRTG IVLTTDSSRS SAPIVSEYIT ## VNWFEPKSYS VQLKEVNSDS GTTVTICSDK WLANPFLDCW ITIEEVG ## // ## ID 009L_FRG3G Reviewed; 948 AA. ## AC Q6GZW6; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 60. ## DE RecName: Full=Putative helicase 009L; ## DE EC=3.6.4.-; ## GN ORFNames=FV3-009L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09668.1; -; Genomic_DNA. ## DR RefSeq; YP_031587.1; NC_005946.1. ## DR PRIDE; Q6GZW6; -. ## DR GeneID; 2947781; -. ## DR KEGG; vg:2947781; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. ## DR GO; GO:0003677; F:DNA binding; IEA:InterPro. ## DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW. ## DR Gene3D; 3.40.50.10810; -; 1. ## DR InterPro; IPR006935; Helicase/UvrB_N. ## DR InterPro; IPR014001; Helicase_ATP-bd. ## DR InterPro; IPR001650; Helicase_C. ## DR InterPro; IPR027417; P-loop_NTPase. ## DR InterPro; IPR038718; SNF2-like_sf. ## DR Pfam; PF00271; Helicase_C; 1. ## DR Pfam; PF04851; ResIII; 1. ## DR SMART; SM00487; DEXDc; 1. ## DR SMART; SM00490; HELICc; 1. ## DR SUPFAM; SSF52540; SSF52540; 2. ## DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. ## DR PROSITE; PS51194; HELICASE_CTER; 1. ## PE 4: Predicted; ## KW ATP-binding; Helicase; Hydrolase; Nucleotide-binding; Reference proteome. ## FT CHAIN 1..948 ## FT /note="Putative helicase 009L" ## FT /id="PRO_0000410580" ## FT DOMAIN 64..243 ## FT /note="Helicase ATP-binding" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541" ## FT DOMAIN 371..554 ## FT /note="Helicase C-terminal" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00542" ## FT NP_BIND 77..84 ## FT /note="ATP" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541" ## FT MOTIF 187..190 ## FT /note="DEAH box" ## SQ SEQUENCE 948 AA; 106444 MW; FD4765111B43B4FF CRC64; ## MDTSPYDFLK LYPWLSRGEA DKGTLLDAFP GETFEQSLAS DVAMRRAVQD DPAFGHQKLV ## ETFLSEDTPY RELLLFHAPG TGKTCTVVSV AERAKEKGLT RGCIVLARGA ALLRNFLHEL ## VFNCGTGGRY IPEGYADMGD QERTRKMRKA VSSYYQFRTY ETFAKSVATM SAEAIRARYD ## RFVIVMDEVH HLRSVQAEGV NTYSAISRFL RTVRGCVKML LTGTPMTNEP GELADVLNLI ## LPQDKTIRPE DGIFSNSGDL LKPDELAERV RGRVSYLKAA RPDAGLTFAG EVLGGTGMTH ## LRLVRLEMSA FQSDAYASAW DQDAGDRNIF SNSRQCSLAV MPDRRWGSAA EARNPSQVRR ## MAGQNLAEYS VKYDYLVRVA SSSPKTFAYC EYVNGSGLSL LSDILLANGW RRATGRETTP ## GKRFALLTAS QKNIHKIVQR FNHEDNVDGA YISLLLGSRV VAEGLTFKEV RHTVILTPHW ## NYTETAQAIA RSWRAGSHDR LKARGEAVAV TVHRLVAVPR GRDTPRSIDS DMYAVSEVKD ## KRIKAVERIL MTSAADCSLL RSRNLYPSEF DGSRECEYGR CAYRCSNVSV EPGPLPALLG ## ASAAEAVAQV RLDGGGDPAI MKVDMSTLWA EVTAGRRYVN RWGDGAVLRA EGGRLELSAP ## YGSSEEGRWG DFYKTRNLCY AKMDQDHLRA DDLRDSLPQE VEELLTVSPV ETIGETASAM ## PQEVATAILM ACVQARADGK TLNVVRRDAL LDFYKGFYAM GPSGWTVWLH ARGANAKVYD ## GRRWNPADED TLEFLAARSA KFTDTRIGYY GLYNPNLKDF CIRDVTQGKR DKVDLRKLTV ## GRRCVDWDQR TLVHIVARLM KIDGRRDFMP HATLREMREL AEQDPLHEPS DLTSKEACRR ## FLFWTQKGDN KFRRQDICKA MEKWFIENDL MEDNFDCGHQ HKRRGKFA ## // ## ID 009R_IIV6 Reviewed; 85 AA. ## AC Q91G85; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-DEC-2001, sequence version 1. ## DT 12-AUG-2020, entry version 36. ## DE RecName: Full=Uncharacterized protein 009R; ## DE Flags: Precursor; ## GN ORFNames=IIV6-009R; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## DR EMBL; AF303741; AAK81947.1; -; Genomic_DNA. ## DR RefSeq; NP_149472.1; NC_003038.1. ## DR PRIDE; Q91G85; -. ## DR GeneID; 1733381; -. ## DR KEGG; vg:1733381; -. ## DR Proteomes; UP000001359; Genome. ## PE 3: Inferred from homology; ## KW Reference proteome; Signal. ## FT SIGNAL 1..20 ## FT /evidence="ECO:0000255" ## FT CHAIN 21..85 ## FT /note="Uncharacterized protein 009R" ## FT /id="PRO_0000377959" ## SQ SEQUENCE 85 AA; 9522 MW; 10D019471F22B372 CRC64; ## MIKLFCVLAA FISINSACQS SHQQREEFTV ATYHSSSICT TYCYSNCVVA SQHKGLNVES ## YTCDKPDPYG RETVCKCTLI KCHDI ## // ## ID 010R_FRG3G Reviewed; 137 AA. ## AC Q6GZW5; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 34. ## DE RecName: Full=Uncharacterized protein 010R; ## GN ORFNames=FV3-010R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## CC -!- SUBCELLULAR LOCATION: Host membrane {ECO:0000305}; Single-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; AY548484; AAT09669.1; -; Genomic_DNA. ## DR RefSeq; YP_031588.1; NC_005946.1. ## DR SMR; Q6GZW5; -. ## DR GeneID; 2947782; -. ## DR KEGG; vg:2947782; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Host membrane; Membrane; Reference proteome; Transmembrane; ## KW Transmembrane helix. ## FT CHAIN 1..137 ## FT /note="Uncharacterized protein 010R" ## FT /id="PRO_0000410534" ## FT TRANSMEM 20..42 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 137 AA; 14878 MW; 69F02C3584628958 CRC64; ## MKMDTDCRHW IVLASVPVLT VLAFKGEGAL ALAGLLVMAA VAMYRDRTEK KYSAARAPSP ## IAGHKTAYVT DPSAFAAGTV PVYPAPSNMG SDRFEGWVGG VLTGVGSSHL DHRKFAERQL ## VDRREKMVGY GWTKSFF ## // ## ID 011L_IIV3 Reviewed; 751 AA. ## AC Q197E9; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 25. ## DE RecName: Full=Uncharacterized protein 011L; ## GN ORFNames=IIV3-011L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82041.1; -; Genomic_DNA. ## DR RefSeq; YP_654583.1; NC_008187.1. ## DR PRIDE; Q197E9; -. ## DR GeneID; 4156260; -. ## DR KEGG; vg:4156260; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..751 ## FT /note="Uncharacterized protein 011L" ## FT /id="PRO_0000377801" ## FT COMPBIAS 123..160 ## FT /note="Pro-rich" ## FT COMPBIAS 241..272 ## FT /note="Pro-rich" ## SQ SEQUENCE 751 AA; 84876 MW; 6C5EA29DA7BDF6F7 CRC64; ## MMESPKYKKS TCSVTNLGGT CILPQKGATA PKAKDVSPEL LVNKMDNLCQ DWARTRNEYN ## KVHIEQAPTD SYFGVVHSHT PKKKYTSRDS DSEPEATSTR RSATAQRAAN LKSSPVDQWS ## TTPPQPQPQP AAPTVKKTCA SSPPAALSVK RTCTSPPPPP VLIDDDTGED AFYDTNDPDI ## FYDIENGVSE LETEGPKRPV YYQRNIRYPI DGSVPQESEQ WYDPIDDEFL ASSGDVVSLE ## PSPIAAFQPT PPKTVQFVPM PEEIIVPPPP PPKTVVDEGV QAMPYTVDQM IQTDFEESPL ## LANVNLRTIP IEEVNPNFSP VLMQDMVRDS FVFGTVAQRV MASQRVKQFF KELIEQDVSL ## AGRMCMDSGS PQLNLYNSLM GVKLLYRWRS STTFYRAIVP EIDEPVQVMQ DVLSSSEWAK ## FDSQAGIPPK MVYIHYKLLN DLVKTLICPN FQLTHAALVC VDCRPEAVGS DGLQDGRQRR ## CSNLVSEYHE MTLEDLFNTI KPADLNAKNI ILSVLFQMLY AVATVQKQFG MGGLFANADS ## VHVRRIQPGG FWHYTVNGLR YSVPNYGYLV ILTNFTDVVN YRPDFATTRY FGRRQAKVVP ## TRNWYKFVPF TTRYRPFVTV DPITQAKTTA YAPNPPTEGI TINEFYKDSS DLRPSVPVDL ## NDMITFPVPE FHLTICRLFS FFSKFYDSNF IGNDPFVRNL VDRYSQPFEF PDVYWPEDGV ## SRVLACYTIE EIYPNWVDGD TDYVIESYNL D ## // ## ID 011R_FRG3G Reviewed; 70 AA. ## AC Q6GZW4; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 34. ## DE RecName: Full=Uncharacterized protein 011R; ## GN ORFNames=FV3-011R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## RN [2] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RA Tan W.G.H., Barkman T.J., Chinchar V.G., Essani K.; ## RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases. ## CC -!- SUBCELLULAR LOCATION: Host membrane {ECO:0000305}; Single-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; AY548484; AAT09670.1; -; Genomic_DNA. ## DR RefSeq; YP_031589.1; NC_005946.1. ## DR GeneID; 2947783; -. ## DR KEGG; vg:2947783; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Host membrane; Membrane; Reference proteome; Transmembrane; ## KW Transmembrane helix. ## FT CHAIN 1..70 ## FT /note="Uncharacterized protein 011R" ## FT /id="PRO_0000410547" ## FT TRANSMEM 4..24 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 70 AA; 7872 MW; D4A52724E9D798C6 CRC64; ## MTSVKTIAML AMLVIVAALI YMGYRTFTSM QSKLNELESR VNAPQLRPPV MSPIVPLNFI ## ESEDLDKELD ## // ## ID 012L_FRG3G Reviewed; 297 AA. ## AC Q6GZW3; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 33. ## DE RecName: Full=Uncharacterized protein 012L; ## GN ORFNames=FV3-012L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09671.1; -; Genomic_DNA. ## DR RefSeq; YP_031590.1; NC_005946.1. ## DR GeneID; 2947784; -. ## DR KEGG; vg:2947784; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..297 ## FT /note="Uncharacterized protein 012L" ## FT /id="PRO_0000410530" ## SQ SEQUENCE 297 AA; 32669 MW; 9B1D9247FF7E5D25 CRC64; ## MCAKLVEMAF GPVNADSPPL TAEEKESAVE KLVGSKPFPA LKKKYHDKVP AQDPKYCLFS ## FVEVLPSCDI KAAGAEEMCS CCIKRRRGQV FGVACVRGTA HTLAKAKQKA DKLVGDYDSV ## HVVQTCHVGR PFPLVSSGMA QETVAPSAME AAEAAMDAKS AEKRKERMRQ KLEMRKREQE ## IKARNRKLLE DPSCDPDAEE ETDLERYATL RVKTTCLLEN AKNASAQIKE YLASMRKSAE ## AVVAMEAADP TLVENYPGLI RDSRAKMGVS KQDTEAFLKM SSFDCLTAAS ELETMGF ## // ## ID 013L_IIV3 Reviewed; 90 AA. ## AC Q197E7; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 34. ## DE RecName: Full=Uncharacterized protein IIV3-013L; ## GN ORFNames=IIV3-013L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## CC -!- SUBCELLULAR LOCATION: Host membrane {ECO:0000305}; Single-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; DQ643392; ABF82043.1; -; Genomic_DNA. ## DR RefSeq; YP_654585.1; NC_008187.1. ## DR SMR; Q197E7; -. ## DR GeneID; 4156262; -. ## DR KEGG; vg:4156262; -. ## DR Proteomes; UP000001358; Genome. ## DR GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Host membrane; Membrane; Reference proteome; Transmembrane; ## KW Transmembrane helix. ## FT CHAIN 1..90 ## FT /note="Uncharacterized protein IIV3-013L" ## FT /id="PRO_0000377942" ## FT TRANSMEM 52..72 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 90 AA; 10851 MW; 077C22D16315DB07 CRC64; ## MYYRDQYGNV KYAPEGMGPH HAASSSHHSA QHHHMTKENF SMDDVHSWFE KYKMWFLYAL ## ILALIFGVFM WWSKYNHDKK RSLNTASIFY ## // ## ID 013R_FRG3G Reviewed; 68 AA. ## AC Q6GZW2; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 29. ## DE RecName: Full=Uncharacterized protein 013R; ## GN ORFNames=FV3-013R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09672.1; -; Genomic_DNA. ## DR RefSeq; YP_031591.1; NC_005946.1. ## DR GeneID; 2947785; -. ## DR KEGG; vg:2947785; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..68 ## FT /note="Uncharacterized protein 013R" ## FT /id="PRO_0000410562" ## SQ SEQUENCE 68 AA; 7549 MW; D0C9713859A73203 CRC64; ## MANSVAFSSM TWYSPLASDN LYDICVDKVH NRVLCLCHSF GCCTNAVVIW ILPSFDEFTP ## QTLSCKGP ## // ## ID 014R_FRG3G Reviewed; 119 AA. ## AC Q6GZW1; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Uncharacterized protein 014R; ## GN ORFNames=FV3-014R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09673.1; -; Genomic_DNA. ## DR RefSeq; YP_031592.1; NC_005946.1. ## DR GeneID; 2947786; -. ## DR KEGG; vg:2947786; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Coiled coil; Reference proteome. ## FT CHAIN 1..119 ## FT /note="Uncharacterized protein 014R" ## FT /id="PRO_0000410559" ## FT COILED 6..36 ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 119 AA; 13358 MW; C15D333E848F54B1 CRC64; ## METLVQAYLD IQGKIAEFRR EIKALRVEEK AITANLFEAM GEAGVESIRI SEDRYLVAEE ## KPKRTRSKQQ FYQAAEGEGF TQEDVDRLMS LSRGAVTGSS SNVKIRKSAP ARNEEDDDG ## // ## ID 015R_FRG3G Reviewed; 322 AA. ## AC Q6GZW0; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 44. ## DE RecName: Full=Uncharacterized protein 015R; ## GN ORFNames=FV3-015R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09674.1; -; Genomic_DNA. ## DR RefSeq; YP_031593.1; NC_005946.1. ## DR PRIDE; Q6GZW0; -. ## DR GeneID; 2947735; -. ## DR KEGG; vg:2947735; -. ## DR Proteomes; UP000008770; Genome. ## DR InterPro; IPR027417; P-loop_NTPase. ## DR SUPFAM; SSF52540; SSF52540; 1. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..322 ## FT /note="Uncharacterized protein 015R" ## FT /id="PRO_0000410504" ## SQ SEQUENCE 322 AA; 36098 MW; 8E5F5B3DA9CDFF8A CRC64; ## MEQVPIKEMR LSDLRPNNKS IDTDLGGTKL VVIGKPGSGK STLIKALLDS KRHIIPCAVV ## ISGSEEANGF YKGVVPDLFI YHQFSPSIID RIHRRQVKAK AEMGSKKSWL LVVIDDCMDN ## AKMFNDKEVR ALFKNGRHWN VLVVIANQYV MDLTPDLRSS VDGVFLFREN NVTYRDKTYA ## NFASVVPKKL YPTVMETVCQ NYRCMFIDNT KATDNWHDSV FWYKAPYSKS AVAPFGARSY ## WKYACSKTGE EMPAVFDNVK ILGDLLLKEL PEAGEALVTY GGKDGPSDNE DGPSDDEDGP ## SDDEEGLSKD GVSEYYQSDL DD ## // ## ID 017L_FRG3G Reviewed; 502 AA. ## AC Q6GZV8; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 33. ## DE RecName: Full=Uncharacterized protein 017L; ## GN ORFNames=FV3-017L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09676.1; -; Genomic_DNA. ## DR RefSeq; YP_031595.1; NC_005946.1. ## DR SMR; Q6GZV8; -. ## DR GeneID; 2947737; -. ## DR KEGG; vg:2947737; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..502 ## FT /note="Uncharacterized protein 017L" ## FT /id="PRO_0000410557" ## FT COMPBIAS 425..428 ## FT /note="Poly-Ala" ## SQ SEQUENCE 502 AA; 53469 MW; A747EE6F952CBAD7 CRC64; ## METMSDYSKE VSEALSALRG ELSALSAAIS NTVRAGSYSA PVAKDCKAGH CDSKAVLKSL ## SRSARDLDSA VEAVSSNCEW ASSGYGKQIA RALRDDAVRV KREVESTRDA VDVVTPSCCV ## QGLAEEAGKL SEMAAVYRCM ATVFETADSH GVREMLAKVD GLKQTMSGFK RLLGKTAEID ## GLSDSVIRLG RSIGEVLPAT EGKAMRDLVK QCERLNGLVV DGSRKVEEQC SKLRDMASQS ## YVVADLASQY DVLGGKAQEA LSASDALEQA AAVALRAKAA ADAVAKSLDS LDVKKLDRLL ## EQASAVSGLL AKKNDLDAVV TSLAGLEALV AKKDELYKIC AAVNSVDKSK LELLNVKPDR ## LKSLTEQTVV VSQMTTALAT FNEDKLDSVL GKYMQMHRFL GMATQLKLMS DSLAEFQPAK ## MAQMAAAASQ LKDFLTDQTV SRLEKVSAAV DATDVTKYAS AFSDGGMVSD MTKAYETVKA ## FAAVVNSLDS KKLKLVAECA KK ## // ## ID 018L_FRG3G Reviewed; 78 AA. ## AC Q6GZV7; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Uncharacterized protein 018L; ## DE Flags: Precursor; ## GN ORFNames=FV3-018L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09677.1; -; Genomic_DNA. ## DR RefSeq; YP_031596.1; NC_005946.1. ## DR GeneID; 2947738; -. ## DR KEGG; vg:2947738; -. ## DR Proteomes; UP000008770; Genome. ## PE 3: Inferred from homology; ## KW Reference proteome; Signal. ## FT SIGNAL 1..27 ## FT /evidence="ECO:0000255" ## FT CHAIN 28..78 ## FT /note="Uncharacterized protein 018L" ## FT /id="PRO_0000410548" ## SQ SEQUENCE 78 AA; 8280 MW; AB74A887451B977D CRC64; ## MQNSKTDMCA ALWAVTGLVL NVAVRFALEP FKESMGQGWH TAARVAVNGA IVLALADRLS ## DSPVTMTLFV MALSASPE ## // ## ID 019R_FRG3G Reviewed; 851 AA. ## AC Q6GZV6; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 78. ## DE RecName: Full=Putative serine/threonine-protein kinase 019R; ## DE EC=2.7.11.1; ## GN ORFNames=FV3-019R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## CC -!- CATALYTIC ACTIVITY: ## CC Reaction=ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl- ## CC [protein]; Xref=Rhea:RHEA:17989, Rhea:RHEA-COMP:9863, Rhea:RHEA- ## CC COMP:11604, ChEBI:CHEBI:15378, ChEBI:CHEBI:29999, ChEBI:CHEBI:30616, ## CC ChEBI:CHEBI:83421, ChEBI:CHEBI:456216; EC=2.7.11.1; ## CC -!- CATALYTIC ACTIVITY: ## CC Reaction=ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L- ## CC threonyl-[protein]; Xref=Rhea:RHEA:46608, Rhea:RHEA-COMP:11060, ## CC Rhea:RHEA-COMP:11605, ChEBI:CHEBI:15378, ChEBI:CHEBI:30013, ## CC ChEBI:CHEBI:30616, ChEBI:CHEBI:61977, ChEBI:CHEBI:456216; ## CC EC=2.7.11.1; ## CC -!- SIMILARITY: Belongs to the protein kinase superfamily. Ser/Thr protein ## CC kinase family. {ECO:0000255|PROSITE-ProRule:PRU00159}. ## DR EMBL; AY548484; AAT09678.1; -; Genomic_DNA. ## DR RefSeq; YP_031597.1; NC_005946.1. ## DR GeneID; 2947739; -. ## DR KEGG; vg:2947739; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. ## DR GO; GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW. ## DR InterPro; IPR014901; 2-cysteine_adaptor. ## DR InterPro; IPR011009; Kinase-like_dom_sf. ## DR InterPro; IPR000719; Prot_kinase_dom. ## DR InterPro; IPR017441; Protein_kinase_ATP_BS. ## DR InterPro; IPR008271; Ser/Thr_kinase_AS. ## DR Pfam; PF08793; 2C_adapt; 5. ## DR Pfam; PF00069; Pkinase; 1. ## DR SMART; SM00220; S_TKc; 1. ## DR SUPFAM; SSF56112; SSF56112; 1. ## DR PROSITE; PS00107; PROTEIN_KINASE_ATP; 1. ## DR PROSITE; PS50011; PROTEIN_KINASE_DOM; 1. ## DR PROSITE; PS00108; PROTEIN_KINASE_ST; 1. ## PE 3: Inferred from homology; ## KW ATP-binding; Kinase; Nucleotide-binding; Reference proteome; ## KW Serine/threonine-protein kinase; Transferase. ## FT CHAIN 1..851 ## FT /note="Putative serine/threonine-protein kinase 019R" ## FT /id="PRO_0000410576" ## FT DOMAIN 456..851 ## FT /note="Protein kinase" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00159" ## FT NP_BIND 462..470 ## FT /note="ATP" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00159" ## FT COMPBIAS 53..59 ## FT /note="Poly-Ala" ## FT ACT_SITE 608 ## FT /note="Proton acceptor" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00159, ## FT ECO:0000255|PROSITE-ProRule:PRU10027" ## FT BINDING 485 ## FT /note="ATP" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00159" ## SQ SEQUENCE 851 AA; 92929 MW; 5FB497EDDDD37D89 CRC64; ## MATNYCDEFE RNPTRNPRTG RTIKRGGPVF RALERECSDG AARVFPAAAV RGAAAARAAS ## PRVAAASPCP EFARDPTRNP RTGRPIKRGG PVFRALEREC ADYGGASPRR VSPARAFPNR ## RVSPARRQSP AEAAEASPCP EFARDPTRNP RTGRTIKRGG PTYRALEAEC ADYGRLSPIR ## SPWSDWSSTG LSPFRSHMRK SPARRSPARR SPARRSLARY TEHLTSDSET EVDYDARNVI ## RSQVGPGGVC ERFAADPTRN PVTGSPLSRN DPLYTDLMEI CKGYPDTPLT KSLTGEGTDD ## DTCEAFCRDP TRNPVTGQKM RRNGIEYQMF AEECDCSGIS RPSGVSRTSG TSGSSGSSAS ## SRPPNSFEAP GASSRPPNSF EASGAARVPG TPSVSRGEPR WMSSISTRHN YDESNPMSVA ## FRLRHVKDIR KFLRTVRPGR SGFCATDKGG WLGSAAVSDN VIGQGSWGSV HMVKFRDFPE ## EFVVKEAVLM SVSEKHRYKP TVVWDEWAAG SVPDEVVVNN MVTEIAATGM TPFVPLTAGA ## GACDSCNPQL LEKAAKVTKC YLQAMEAADF SLDRVLPTMS PDQAASALAQ ILLGLQSLQT ## TLGIMHNDIK AHNILVKRVP PGGYWKVTDS FNGQVFYIPN EGYLCMLADY GVVRLVKPAV ## GMDTLYGTRN ARFVPRDVGR WGKGAGTEYV VTPIRSKISV VVRGGRFVGV EPNKAVRYWK ## NTDTSKVGDV ITTNNVFYMG YDIEPDMQVQ LDDTNSFPVW ESRGDVADCV RTFVGGKRAS ## QPGFHRLFYK KTGSAWEKAA ETVAKQNPLF SGFTLDGSGL KYIRAATACA YIFPGMAVPR ## PGEREIESFT M ## // ## ID 020R_FRG3G Reviewed; 148 AA. ## AC Q6GZV5; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 35. ## DE RecName: Full=Uncharacterized protein 020R; ## GN ORFNames=FV3-020R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## CC -!- SUBCELLULAR LOCATION: Host membrane {ECO:0000305}; Single-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; AY548484; AAT09679.1; -; Genomic_DNA. ## DR RefSeq; YP_031598.1; NC_005946.1. ## DR GeneID; 2947740; -. ## DR KEGG; vg:2947740; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Host membrane; Membrane; Reference proteome; Transmembrane; ## KW Transmembrane helix. ## FT CHAIN 1..148 ## FT /note="Uncharacterized protein 020R" ## FT /id="PRO_0000410545" ## FT TRANSMEM 1..21 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## FT COMPBIAS 28..58 ## FT /note="Pro-rich" ## SQ SEQUENCE 148 AA; 16003 MW; A7BAA7BE95298E1A CRC64; ## MLQNYAIVLG MAVAVAIWYF FKIEEEAPPG PNPPKPDPPK PDPPKMHMPK KKPHWMDPHL ## TGSQTVQYSR NRSMGDPIRG DLPIIPRDDG WFSTAANPAH TLHAGALSMI APASTGGGLT ## VNKLISAYAD KGNAMSGRHN SPSYYGSS ## // ## ID 021L_FRG3G Reviewed; 219 AA. ## AC Q6GZV4; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Uncharacterized protein 021L; ## GN ORFNames=FV3-021L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09680.1; -; Genomic_DNA. ## DR RefSeq; YP_031599.1; NC_005946.1. ## DR GeneID; 2947741; -. ## DR KEGG; vg:2947741; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..219 ## FT /note="Uncharacterized protein 021L" ## FT /id="PRO_0000410539" ## SQ SEQUENCE 219 AA; 25445 MW; 8C499E933074FF36 CRC64; ## METIVLVPRQ DQETFSDSRP VLDGDLMLEF LENKIRHPVR RRQPRVVPVT SSDPEVVDDE ## DDEDQSDDSD EERQRLYFQY MVLKRMYPTE VIPEMTTYSN VAIMREKYKL LTRRLSLDKH ## INEWKKYIIV GMCIMELVMT KLNFDASGFA RYQIKSLGAY DQLLAEMADK YYEATPQSSV ## EMRLMTTMGM NMAVFMLGKL LGGQMDFLGL LENAFGSSS ## // ## ID 022L_IIV3 Reviewed; 225 AA. ## AC Q197D8; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 34. ## DE RecName: Full=Transmembrane protein 022L; ## GN ORFNames=IIV3-022L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## CC -!- SUBCELLULAR LOCATION: Host membrane {ECO:0000305}; Multi-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; DQ643392; ABF82052.1; -; Genomic_DNA. ## DR RefSeq; YP_654594.1; NC_008187.1. ## DR GeneID; 4156271; -. ## DR KEGG; vg:4156271; -. ## DR Proteomes; UP000001358; Genome. ## DR GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Host membrane; Membrane; Reference proteome; Transmembrane; ## KW Transmembrane helix. ## FT CHAIN 1..225 ## FT /note="Transmembrane protein 022L" ## FT /id="PRO_0000377944" ## FT TRANSMEM 2..22 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## FT TRANSMEM 53..73 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## FT TRANSMEM 80..100 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## FT TRANSMEM 111..131 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## FT TRANSMEM 136..156 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## FT TRANSMEM 162..182 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 225 AA; 25107 MW; 3BD60B1CA8C7D7F5 CRC64; ## MSFVHKLPTF YTAGVGAIIG GLSLRFNGAK FLSDWYINKY NDSVPAWSLQ TCHWAGIALY ## CVGWVTLASV IYLKHRDNSI LKGSILSCIV ISAVWSILEY NQDMFVSNPK LPLISCAMLV ## SSLAALVALK YHIKDIFTIL GAAIIIILAE YVVLPYQRQY NIVDGIGLPL LLLGFFILYQ ## VFSVPNPSTP TGVMVPKPED EWDIEMAPLN HRDRQVPESE LENVK ## // ## ID 023R_FRG3G Reviewed; 382 AA. ## AC Q6GZV2; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Uncharacterized protein 023R; ## GN ORFNames=FV3-023R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09682.1; -; Genomic_DNA. ## DR RefSeq; YP_031601.1; NC_005946.1. ## DR GeneID; 2947743; -. ## DR KEGG; vg:2947743; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..382 ## FT /note="Uncharacterized protein 023R" ## FT /id="PRO_0000410521" ## SQ SEQUENCE 382 AA; 42541 MW; 67141567EEC063E1 CRC64; ## MRVSQTSWIV SRMLEYPRGG FFYSTDMACM MEGLAEELAG GHKDEVLIVS GRNGDDEVFK ## EFPNVRAADG LKGPNSIDPE TKLVLIIDVS PTAISNALAA TLQEFLIPVW VFCNHTRTLT ## ASVTRRLGYK LWPKGTYTPY ICEKAGVSEV VTYNQPESEK FVAFMSAARQ IMDKRKSKKT ## MQELAFLPHL AFAEIAMEGD QEMTPTLTAK KVSDIKDEQV NELASAMFRT GKLSHLDMLS ## VPDCVYSCGE ALKREVAKAK ANRERFVVAL RNAQYKKYTA GLLEAGTPVK TFTEVIKNWG ## AYDTIFLPMG VDWTYTGGSN LIRMMMTPGS HKTVTFVPES DDVHEFCHNK PTVNTMGVES ## AATGLAAELN RRWRRDNPVD AS ## // ## ID 023R_IIV3 Reviewed; 106 AA. ## AC Q197D7; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 23. ## DE RecName: Full=Uncharacterized protein 023R; ## GN ORFNames=IIV3-023R; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82053.1; -; Genomic_DNA. ## DR RefSeq; YP_654595.1; NC_008187.1. ## DR GeneID; 4156230; -. ## DR KEGG; vg:4156230; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..106 ## FT /note="Uncharacterized protein 023R" ## FT /id="PRO_0000377945" ## SQ SEQUENCE 106 AA; 12767 MW; 6620465F6FC52A18 CRC64; ## MGSYMLFDSL IKLVENRNPL NHEQKLWLID VINNTLNLEG KEKLYSLLIV HNKQQTKIYD ## PKEPFYDIEK IPVQLQLVWY EFTKMHLKSQ NEDRRRKMSL YAGRSP ## // ## ID 024R_FRG3G Reviewed; 365 AA. ## AC Q6GZV1; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 34. ## DE RecName: Full=Uncharacterized protein 024R; ## DE Flags: Precursor; ## GN ORFNames=FV3-024R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09683.1; -; Genomic_DNA. ## DR RefSeq; YP_031602.1; NC_005946.1. ## DR GeneID; 2947744; -. ## DR KEGG; vg:2947744; -. ## DR Proteomes; UP000008770; Genome. ## PE 3: Inferred from homology; ## KW Reference proteome; Signal. ## FT SIGNAL 1..21 ## FT /evidence="ECO:0000255" ## FT CHAIN 22..365 ## FT /note="Uncharacterized protein 024R" ## FT /id="PRO_0000410520" ## SQ SEQUENCE 365 AA; 40985 MW; FF23076D062663E7 CRC64; ## MWQYLPILLM TMISQLEWTV AAVKRYPAGG FITGDKLSRV FEALPWRVAV VSDEPEKYEG ## FPILTEEDPA VFEDADCILF AVSDPKCVTG AMKSVFMASS KTAWVVYDGT ETRATVRSWM ## RRLWRAETYV PLLTHRGFVT DVCVYSQPDS ERYVSVMTAT AHFYSNRLEV LEEMAFVPHL ## AYAKLAMGRY TVLDGCMSVK GSADVAPLNR SMWFLTAAAI PHGEIDTDSL FSDPGAVYSC ## GSALREALGS LPEGSTSVVA VRNSSYRKYV RGILGPNFRV ETFTNVVKTW GVYDYVLLPM ## GISDSYKQGR DLMEKLEMPG GHRVVTFAPE NYTVNEVHLN RPLKYAIKRM DLITPMVLRH ## VSLNK ## // ## ID 025R_IIV3 Reviewed; 178 AA. ## AC Q197D5; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 22. ## DE RecName: Full=Uncharacterized protein 025R; ## DE Flags: Precursor; ## GN ORFNames=IIV3-025R; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82055.1; -; Genomic_DNA. ## DR RefSeq; YP_654597.1; NC_008187.1. ## DR GeneID; 4156275; -. ## DR KEGG; vg:4156275; -. ## DR Proteomes; UP000001358; Genome. ## PE 3: Inferred from homology; ## KW Reference proteome; Signal. ## FT SIGNAL 1..23 ## FT /evidence="ECO:0000255" ## FT CHAIN 24..178 ## FT /note="Uncharacterized protein 025R" ## FT /id="PRO_0000377946" ## SQ SEQUENCE 178 AA; 19843 MW; 6083F08DEFD9904D CRC64; ## MNYSVIWAIT ILILGLVLTL AWARQNPTHP INPLVLNYHT KPSPKRHRMV LVVESFASVD ## ALVELVENIL SQTIRVASIT VVSQRPDHLR QVPLLHQTCT FSRASGLSAL FKETSGTLVV ## FISKEGFHHF QSPTLLETID QRGVTAEQTL PGIVLRNTDM PGIDLTTVYR QQRLGLGN ## // ## ID 026R_IIV6 Reviewed; 59 AA. ## AC Q91G70; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-DEC-2001, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Uncharacterized protein 026R; ## GN ORFNames=IIV6-026R; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## DR EMBL; AF303741; AAK81962.1; -; Genomic_DNA. ## DR RefSeq; NP_149489.1; NC_003038.1. ## DR GeneID; 1733281; -. ## DR KEGG; vg:1733281; -. ## DR Proteomes; UP000001359; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..59 ## FT /note="Uncharacterized protein 026R" ## FT /id="PRO_0000377962" ## SQ SEQUENCE 59 AA; 6682 MW; 330A54C09D6A65AC CRC64; ## MAISFFSDTS YIIKSILLIS LFSIIPLEDE VTKLKSSSLR ETSELNKEEG ITTCLYTFN ## // ## ID 027R_FRG3G Reviewed; 970 AA. ## AC Q6GZU9; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 42. ## DE RecName: Full=Uncharacterized protein 027R; ## GN ORFNames=FV3-027R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09686.1; -; Genomic_DNA. ## DR RefSeq; YP_031605.1; NC_005946.1. ## DR GeneID; 2947747; -. ## DR KEGG; vg:2947747; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW. ## DR InterPro; IPR006598; CAP10. ## DR Pfam; PF05686; Glyco_transf_90; 1. ## DR SMART; SM00672; CAP10; 1. ## PE 4: Predicted; ## KW Kinase; Reference proteome; Transferase. ## FT CHAIN 1..970 ## FT /note="Uncharacterized protein 027R" ## FT /id="PRO_0000410503" ## FT COMPBIAS 846..850 ## FT /note="Poly-Ala" ## SQ SEQUENCE 970 AA; 107189 MW; 87C5E52FF16793FF CRC64; ## MANFLQDVNC ETVSEYDGPD ASIPEGVWEG YVGHDHAALW RTWSYIYECC KKGTLVQFRG ## GKLVTFSMFD NPRFSNGAGI DAQKVLDLED RARELQGYGP VNRRTDVMPV DRWTLNGPLL ## RYDKMVLEDV GGTGSNRTMV RAQLEALQDE RDVPDCDFIL NVRDYPLLRR DGTRPYPQVY ## GKGRRLPEPW ARGGPHVPVV SMCSGPTYAD IAVPTYECIA HAYTSSGRTL PAGGRFVKTP ## SADSLPAWRD RKALAVFRGS STGAGTSTED NQRLRALQIS MSRPDLADVG ITKWNLRPRK ## TERYDGYRII EPWQFGRKSP YPAAAKPMTP EQIAGYKYVL CLWGHAPAFR LARDLSLGSV ## VLLPSRPPGQ EGLDMWHSSV LKPWTHYIPV RGDLSDLEKR IEWCRDNDAE CEKIAAAGME ## ASLNLLGWEG QLDRWMDVLR SVRLECCPGG YDMPPSPSLV SDSMCVRQMV SFPRYEDIPQ ## PSSPMPVLPR CSGTLRGWGL AASLGWDLGD AAEVLNVKRS TAVLSKTVFN NLIYRTPHLR ## YTFGVAASDP ESTAAVILSE KLKGAVTMRS WLEDSRAWAR GRNVASVLCQ VSQALLEAQA ## AAGTVFGDLS LDTILVVPNP LPEYIYHDGT GGSFGLKLMP GDKWAVVTYG DYTRARIRVL ## KGDGRKGHLA VVGPQPVYTK LSERKWHDIC CLVSCILRTA RTSKRPAARA LAAAVARAAG ## VKRPDMDAEA LEATPYEARE EPLTRFGPAE FINGLVREFK LEEGGWAWTE KNKNIEKVLR ## PWERGLPLYP VRLWLSGDRK EAMRACVSSV LKAAPPRPAT AAGAHHTFQT YLRTVGADLD ## SFPEWAAAAA HLKRLWKSPG SLPAGSASLR APSVPPPCHG PAWALPFGTR TPGEFPSWFD ## PSCLGDWTEA MGQGAPLDLE NGPAKAGSDP VAVHSAWETA SQLSFEEDGW TESEPRPVRR ## EAHVRAKERH ## // ## ID 028R_FRG3G Reviewed; 162 AA. ## AC Q6GZU8; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 53. ## DE RecName: Full=Uncharacterized protein 028R; ## GN ORFNames=FV3-028R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09687.1; -; Genomic_DNA. ## DR RefSeq; YP_031606.1; NC_005946.1. ## DR SMR; Q6GZU8; -. ## DR GeneID; 2947748; -. ## DR KEGG; vg:2947748; -. ## DR Proteomes; UP000008770; Genome. ## DR InterPro; IPR035913; RPB5-like_sf. ## DR SUPFAM; SSF55287; SSF55287; 1. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..162 ## FT /note="Uncharacterized protein 028R" ## FT /id="PRO_0000410501" ## SQ SEQUENCE 162 AA; 18210 MW; 834AB3DB7C536917 CRC64; ## MDPNVLKNLS LMLSRRAGVS GGEPPRMIEW PEYGQRSEPC GSQTVWYVDR PVGAPFIKAF ## ASEVEERGGG ILIHAGKVTF DSAKKLAAMK EVQVFDVKYF SFDLMAVVPE HSLWKRPGDK ## GYPEKTAQSF PKIMASDPVC RYHGFRPRDL VHVKPHDVYI VC ## // ## ID 028R_IIV3 Reviewed; 337 AA. ## AC Q197D2; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 25. ## DE RecName: Full=Uncharacterized protein 028R; ## GN ORFNames=IIV3-028R; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82058.1; -; Genomic_DNA. ## DR RefSeq; YP_654600.1; NC_008187.1. ## DR SMR; Q197D2; -. ## DR GeneID; 4156338; -. ## DR KEGG; vg:4156338; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Coiled coil; Reference proteome. ## FT CHAIN 1..337 ## FT /note="Uncharacterized protein 028R" ## FT /id="PRO_0000377947" ## FT COILED 248..276 ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 337 AA; 38575 MW; 152022C0AB64F0C7 CRC64; ## MDQYITLVEL YIYDCNLFKS KNLKSFYKVH RVPEGDIVPK RRGGQLAGVT KSWVETNLVH ## FPLWLSEWDE TRWGVLNHYP LESWLEKNVS SKVPVNPVMW NFDSECLVYF FHNGRRTPFL ## TPKGVVKLQV FYNLMSGKEV EWFYEISNGF LKPHLHQLSN VRELVRLKHA PVVVGAGGPR ## LVTEGVYSLR DDDFVVDCSQ IAAVKRAIER GESHQSLRKY QCPLFVALTD KFQDTVKLVE ## KKFEVQLNEL KAETTIQVLR EQLRQEKKLK EQVLSLTQSF IPTIGGRGEE FGKPDETPSS ## ASVGDDNFPS STNHTFEARR RPSSLSSGGA LKPSKIL ## // ## ID 029L_FRG3G Reviewed; 98 AA. ## AC Q6GZU7; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 30. ## DE RecName: Full=Uncharacterized protein 029L; ## GN ORFNames=FV3-029L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09688.1; -; Genomic_DNA. ## DR RefSeq; YP_031607.1; NC_005946.1. ## DR SMR; Q6GZU7; -. ## DR GeneID; 2947749; -. ## DR KEGG; vg:2947749; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..98 ## FT /note="Uncharacterized protein 029L" ## FT /id="PRO_0000410570" ## SQ SEQUENCE 98 AA; 11347 MW; 71AEF61745C6986B CRC64; ## MRRMRSGFKH CAIPIDICRW EYILSPLILQ DLQGPQQGGS VAVDVTVRCS VRFVHLPHYG ## GFNHGTVQRR VDPDDCRILR QLHIVLSLRL CLIDRDRL ## // ## ID 029R_IIV6 Reviewed; 129 AA. ## AC Q91G67; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-DEC-2001, sequence version 1. ## DT 12-AUG-2020, entry version 36. ## DE RecName: Full=Uncharacterized protein 029R; ## GN ORFNames=IIV6-029R; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## DR EMBL; AF303741; AAK81965.1; -; Genomic_DNA. ## DR RefSeq; NP_149492.1; NC_003038.1. ## DR PRIDE; Q91G67; -. ## DR GeneID; 1733149; -. ## DR KEGG; vg:1733149; -. ## DR Proteomes; UP000001359; Genome. ## DR InterPro; IPR022549; DUF3627. ## DR Pfam; PF12299; DUF3627; 1. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..129 ## FT /note="Uncharacterized protein 029R" ## FT /id="PRO_0000377963" ## SQ SEQUENCE 129 AA; 15520 MW; 97993387D21FDF99 CRC64; ## MVERLGIAVE DRSPKLRKQA IRERFVLFKK NTERVEKYEY YAIRGQSIYI NGRLSKLQSE ## RYPKMIILLD IFCQPNPRNL FLRFKERIDG KSEWENNFTY AGNNIGCTKE MESDMIRIFN ## ELDDEKRDV ## // ## ID 030L_IIV3 Reviewed; 144 AA. ## AC Q197D0; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 38. ## DE RecName: Full=uncharacterized protein 030L; ## GN ORFNames=IIV3-030L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82060.1; -; Genomic_DNA. ## DR RefSeq; YP_654602.1; NC_008187.1. ## DR GeneID; 4156340; -. ## DR KEGG; vg:4156340; -. ## DR Proteomes; UP000001358; Genome. ## DR InterPro; IPR036249; Thioredoxin-like_sf. ## DR SUPFAM; SSF52833; SSF52833; 1. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..144 ## FT /note="uncharacterized protein 030L" ## FT /id="PRO_0000377948" ## SQ SEQUENCE 144 AA; 16099 MW; C98DBBBC8BA866D8 CRC64; ## MHPTLKSNAG EWSQPIVNLF YSNFSGNCKA LLQYIDNAGI TDHIPIKFIN VDNPTMRSVV ## SAKISHVPAL VVLQDDQMSL YVAESVWEWF DNYRTPPPLA DGATVDSQAS ENGEKEAQPT ## PPKEGLLTVL ELAKQMRKER EQQT ## // ## ID 030R_FRG3G Reviewed; 50 AA. ## AC Q6GZU6; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 29. ## DE RecName: Full=Uncharacterized protein 030R; ## GN ORFNames=FV3-030L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09689.1; -; Genomic_DNA. ## DR RefSeq; YP_031608.1; NC_005946.1. ## DR GeneID; 2947750; -. ## DR KEGG; vg:2947750; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..50 ## FT /note="Uncharacterized protein 030R" ## FT /id="PRO_0000410564" ## SQ SEQUENCE 50 AA; 5990 MW; 3FECFFB812CE3CC7 CRC64; ## MSLYLLLGLK ILRYLKMVIV LRCHSAFLLS VKFLREKRRL KMYLGIMLGF ## // ## ID 031R_FRG3G Reviewed; 139 AA. ## AC Q6GZU5; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Uncharacterized protein 031R; ## GN ORFNames=FV3-031R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09690.1; -; Genomic_DNA. ## DR RefSeq; YP_031609.1; NC_005946.1. ## DR GeneID; 2947751; -. ## DR KEGG; vg:2947751; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..139 ## FT /note="Uncharacterized protein 031R" ## FT /id="PRO_0000410533" ## SQ SEQUENCE 139 AA; 15232 MW; 2E0B739CB0631D40 CRC64; ## MDTPCKLFCI ELKEGYVPGT VSHNHMMPYF LAGSGWPVEI TFHAATVELK TQEDFPPAIG ## IGIHNMTGVP VVETPHSGRM HFVFIFHSKS GRFSATYKCI PVPVVVRDYK TVASVSLTTL ## SLEDIVGVKL FGTACDRSS ## // ## ID 032R_FRG3G Reviewed; 629 AA. ## AC Q6GZU4; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 40. ## DE RecName: Full=Uncharacterized protein 032R; ## GN ORFNames=FV3-032R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09691.1; -; Genomic_DNA. ## DR RefSeq; YP_031610.1; NC_005946.1. ## DR SMR; Q6GZU4; -. ## DR PRIDE; Q6GZU4; -. ## DR GeneID; 2947752; -. ## DR KEGG; vg:2947752; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0006353; P:DNA-templated transcription, termination; IEA:InterPro. ## DR InterPro; IPR011112; Rho_N. ## DR Pfam; PF07498; Rho_N; 1. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..629 ## FT /note="Uncharacterized protein 032R" ## FT /id="PRO_0000410510" ## FT COMPBIAS 44..134 ## FT /note="Ser-rich" ## FT COMPBIAS 401..410 ## FT /note="Poly-Ala" ## SQ SEQUENCE 629 AA; 69922 MW; 57B5C9CFB3931FA1 CRC64; ## MVTVTELRAT AKNLGIRGYS TMRKAELEEA IRDHGRVSEA RVASPRRSPA RSPRKSPAGR ## KSPSKSPAGR KSPSKSPAGR KSPSKSPAGR KSPSKSPAGR KSPSKSPAGR KSPSKSPVRK ## SPSKSPVRKS PRKSPAAKLQ AGDRPASMNI CKNLPKQRLV DIATEMGIDL NRESDGKPKT ## KDQLCADIMG GAGRKSPRKS PSRSPVRKSP SRSPVRKSPV RSPRKSPVRV PSPVRSPVKE ## KTPVRSPARS EDAGSDLAPR PRRGKAVRLD YDEDDDYSYG ASTDNLFSGN KEIPFPTRKR ## RTRKPEKVFV DVRSPHTLTD SEDEDDMVEV PELEDKEITM PGVLSPYSDE IVERGYVSQG ## GADYINYIYR TEYALESDES FARGARPKTN KRDSDRAVRE AAAAAAIARA LDRRSQSGND ## EPAVRRRSAP TDSSRESRRD REPQRDIAEP QRDIAEPQRD IAEPQRDIAE PRKVRFREAG ## SADVRVFERD EPKEYGRVPV RPPLFMPAGE PLQPLKFRPK TPKIDDTIHR AQMVLPSKPS ## QKETDNYYKQ FAGEAVRPSE PVQWDKDDQV LYHKVPAWDD SSYAAAVSAW PMSVDPKQAE ## SVFAEFEQLS AQDSDLIKVR KSIMKALGY ## // ## ID 032R_IIV3 Reviewed; 279 AA. ## AC Q197C8; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 23. ## DE RecName: Full=Uncharacterized protein 032R; ## GN ORFNames=IIV3-032R; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82062.1; -; Genomic_DNA. ## DR RefSeq; YP_654604.1; NC_008187.1. ## DR GeneID; 4156342; -. ## DR KEGG; vg:4156342; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..279 ## FT /note="Uncharacterized protein 032R" ## FT /id="PRO_0000377949" ## SQ SEQUENCE 279 AA; 30303 MW; FB1AFFA91C8A5B4B CRC64; ## MKLMLEIVKN ISEPVGKLAI WFNETYQVDV SETINKWNEL TGMNITVQEN AVSADDTTAE ## ETEYSVVVNE NPTRTAARTR KESKTAAKPR KMQIPKTKDV CQHIFKSGSR AGEQCTTKPK ## NNALFCSAHR VRNSVTSNAT EASEKTVAKT NGTAAPQKRG VKSKSPTVIP SDFDDSDSSS ## SATRGLRKAP TLSPRKPPPT TTTASSAQEE EDEQQAHFSG SSSPPPKNNG NGAVYSDSSS ## DEDDDDAHHT TVIPLLKKGA RKPLDENVQF TSDSSDEED ## // ## ID 032R_IIV6 Reviewed; 100 AA. ## AC Q91G65; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-DEC-2001, sequence version 1. ## DT 12-AUG-2020, entry version 41. ## DE RecName: Full=Uncharacterized protein 032R; ## GN ORFNames=IIV6-032R; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## DR EMBL; AF303741; AAK81967.1; -; Genomic_DNA. ## DR RefSeq; NP_149495.1; NC_003038.1. ## DR SMR; Q91G65; -. ## DR GeneID; 1733207; -. ## DR KEGG; vg:1733207; -. ## DR Proteomes; UP000001359; Genome. ## DR Gene3D; 3.40.220.10; -; 1. ## DR InterPro; IPR043472; Macro_dom-like. ## DR SUPFAM; SSF52949; SSF52949; 1. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..100 ## FT /note="Uncharacterized protein 032R" ## FT /id="PRO_0000377965" ## SQ SEQUENCE 100 AA; 11681 MW; 8FA058944FBCC8FE CRC64; ## MGVYKFCYNK KKEVGQVAVL QKERLIFYIV TKEKSYLKPT LANFSNAIDS LYNECLLRKC ## CKLAIPKIGC CLDRLYWKTV KNIIIDKLCK KGIEVVVYYI ## // ## ID 033R_FRG3G Reviewed; 63 AA. ## AC Q6GZU3; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Transmembrane protein 033R; ## GN ORFNames=FV3-033R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09692.1; -; Genomic_DNA. ## DR RefSeq; YP_031611.1; NC_005946.1. ## DR SMR; Q6GZU3; -. ## DR GeneID; 2947753; -. ## DR KEGG; vg:2947753; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..63 ## FT /note="Transmembrane protein 033R" ## FT /id="PRO_0000410517" ## SQ SEQUENCE 63 AA; 6613 MW; 8ACC91E6139C0CEE CRC64; ## MSGIQLDKET ILKYSSAALV ALSAVVAVMM VSNNSESWKP ILVGAVVAAS GAAAYQSWWP ## KQS ## // ## ID 034R_FRG3G Reviewed; 106 AA. ## AC Q6GZU2; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 34. ## DE RecName: Full=Uncharacterized protein 034R; ## GN ORFNames=FV3-034R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## CC -!- SUBCELLULAR LOCATION: Host membrane {ECO:0000305}; Single-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; AY548484; AAT09693.1; -; Genomic_DNA. ## DR RefSeq; YP_031612.1; NC_005946.1. ## DR GeneID; 2947813; -. ## DR KEGG; vg:2947813; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Host membrane; Membrane; Reference proteome; Transmembrane; ## KW Transmembrane helix. ## FT CHAIN 1..106 ## FT /note="Uncharacterized protein 034R" ## FT /id="PRO_0000410537" ## FT TRANSMEM 69..88 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 106 AA; 11427 MW; 01D1BF1539E4094C CRC64; ## MSAGHLRKRR YVKVGDIHDM GPILGGVHDV SSPPPNVHYQ QQDDHNDPGC MIHYPGEGWF ## SSMSTVEKLM LGAVIVAAVV VGVRMFMSSG NSSATSSFST APYFMG ## // ## ID 034R_IIV6 Reviewed; 134 AA. ## AC Q91G63; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-DEC-2001, sequence version 1. ## DT 12-AUG-2020, entry version 42. ## DE RecName: Full=Uncharacterized protein 034R; ## GN ORFNames=IIV6-034R; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; AF303741; AAK81969.1; -; Genomic_DNA. ## DR RefSeq; NP_149497.1; NC_003038.1. ## DR SMR; Q91G63; -. ## DR GeneID; 1733059; -. ## DR KEGG; vg:1733059; -. ## DR Proteomes; UP000001359; Genome. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Membrane; Reference proteome; Transmembrane; Transmembrane helix. ## FT CHAIN 1..134 ## FT /note="Uncharacterized protein 034R" ## FT /id="PRO_0000377966" ## FT TRANSMEM 4..24 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## FT COMPBIAS 30..49 ## FT /note="Pro-rich" ## SQ SEQUENCE 134 AA; 14639 MW; 72018C276E7A5842 CRC64; ## MKQNLLILLS LLLVVVAIMW WLYEKKKEVP LPPPTPPTPP TPTGVPFLPM YAGLSSPVQY ## NPADYLYGWE KYPHGPAWSF GDRVPYAEAK NALGGHFGGG LYSPRDPILE SKLGGVYIGN ## DLYTVGGVGG DGHW ## // ## ID 035L_FRG3G Reviewed; 153 AA. ## AC Q6GZU1; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 29. ## DE RecName: Full=Uncharacterized protein 035L; ## GN ORFNames=FV3-035L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09694.1; -; Genomic_DNA. ## DR RefSeq; YP_031613.1; NC_005946.1. ## DR GeneID; 2947814; -. ## DR KEGG; vg:2947814; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..153 ## FT /note="Uncharacterized protein 035L" ## FT /id="PRO_0000410567" ## FT COMPBIAS 21..138 ## FT /note="Pro-rich" ## SQ SEQUENCE 153 AA; 17285 MW; D7067BF508B6A9DC CRC64; ## MIWVWPATGR GPGWWGIRRD PWGPEDSSCP CPRLPLSPTG PVGHSGPMGQ CHPPVPSYRR ## GRRDQKDPPL RRQTSPPLPP HPWDRPLPWV PWIPLDLCRH GDPRHPWDPG AQSGYPRVRE ## VRGVPADRPL RPCPRQGPRT AATRKESSCR IPS ## // ## ID 036L_FRG3G Reviewed; 207 AA. ## AC Q6GZU0; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 31. ## DE RecName: Full=Uncharacterized protein 036L; ## GN ORFNames=FV3-036L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09695.1; -; Genomic_DNA. ## DR RefSeq; YP_031614.1; NC_005946.1. ## DR GeneID; 2947815; -. ## DR KEGG; vg:2947815; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..207 ## FT /note="Uncharacterized protein 036L" ## FT /id="PRO_0000410550" ## SQ SEQUENCE 207 AA; 22747 MW; E515285E0146A9F3 CRC64; ## MTLPDVSGSL GPLSPGTNGT LWAVGPRVVR YQIPALAYLT PGALWTLRTR GTSLTSGPIG ## TRDSIRTLHA VHYDVWTLGP LGPLGPTSPR GPSARPCRLQ TDSLHSTDAR CYRCKMLQMQ ## DATDARCKKD MSPFSFPGIL EPSHLVGSLK SPRVDPGVPC RPLALWGHPY QCLRLVPLYQ ## RCLHPHCFPA APGRPWDPWC RPDRLDP ## // ## ID 037L_IIV3 Reviewed; 253 AA. ## AC Q197C3; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 30. ## DE RecName: Full=Uncharacterized protein 037L; ## GN ORFNames=IIV3-037L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## CC -!- SUBCELLULAR LOCATION: Host membrane {ECO:0000305}; Single-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; DQ643392; ABF82067.1; -; Genomic_DNA. ## DR RefSeq; YP_654609.1; NC_008187.1. ## DR SMR; Q197C3; -. ## DR GeneID; 4156347; -. ## DR KEGG; vg:4156347; -. ## DR Proteomes; UP000001358; Genome. ## DR GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Host membrane; Membrane; Reference proteome; Transmembrane; ## KW Transmembrane helix. ## FT CHAIN 1..253 ## FT /note="Uncharacterized protein 037L" ## FT /id="PRO_0000377950" ## FT TRANSMEM 62..78 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 253 AA; 28042 MW; 92BAECA3071B7319 CRC64; ## MNAATSGIQL NAQTLSQQPA MNTPLIHRSF RDDYTGLVSA GDGLYKRKLK VPSTTRCNKF ## KWCSIGWSIG ALIIFLVYKL EKPHVQPTSN GNLSLIEPEK LVSESQLIQK ILNATTPQTT ## TPEIPSSTEP QELVTEILNT TTPQTTTPEI PSSTEPQELV TEIPSSTEPQ EEIFSIFKSP ## KPEEPGGINS IPQYEQESNN VEDEPPPNKP EEEEDHDNQP LEERHTVPIL GDVIIRNKTI ## IIDGGNETII IKP ## // ## ID 037R_FRG3G Reviewed; 209 AA. ## AC Q6GZT9; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 51. ## DE RecName: Full=uncharacterized protein 037R; ## GN ORFNames=FV3-037R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09696.1; -; Genomic_DNA. ## DR RefSeq; YP_031615.1; NC_005946.1. ## DR GeneID; 2947816; -. ## DR KEGG; vg:2947816; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. ## DR Gene3D; 3.40.50.1000; -; 1. ## DR InterPro; IPR004274; FCP1_dom. ## DR InterPro; IPR036412; HAD-like_sf. ## DR InterPro; IPR023214; HAD_sf. ## DR Pfam; PF03031; NIF; 1. ## DR SMART; SM00577; CPDc; 1. ## DR SUPFAM; SSF56784; SSF56784; 1. ## DR PROSITE; PS50969; FCP1; 1. ## PE 4: Predicted; ## KW Hydrolase; Reference proteome. ## FT CHAIN 1..209 ## FT /note="uncharacterized protein 037R" ## FT /id="PRO_0000410500" ## FT DOMAIN 1..199 ## FT /note="FCP1 homology" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00336" ## SQ SEQUENCE 209 AA; 23152 MW; 6BFDB9273F47D124 CRC64; ## MQVFLDLDET LIHSIPVSRL GWTKSKPYPV KPFTVQDAGT PLSVMMGSSK AVNDGRKRLA ## TRLSLFKRTV LTDHIMCWRP TLRTFLNGLF ASGYKINVWT AASKPYALEV VKALNLKSYG ## MGLLVTAQDY PKGSVKRLKY LTGLDAVKIP LSNTAIVDDR EEVKRAQPTR AVHIKPFTAS ## SANTACSESD ELKRVTASLA IIAGRSRRR ## // ## ID 039R_FRG3G Reviewed; 116 AA. ## AC Q6GZT7; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Uncharacterized protein 039R; ## GN ORFNames=FV3-039R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09698.1; -; Genomic_DNA. ## DR RefSeq; YP_031617.1; NC_005946.1. ## DR PRIDE; Q6GZT7; -. ## DR GeneID; 2947818; -. ## DR KEGG; vg:2947818; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..116 ## FT /note="Uncharacterized protein 039R" ## FT /id="PRO_0000410519" ## SQ SEQUENCE 116 AA; 12710 MW; 4DBF76DFCAE72140 CRC64; ## MTSYCDTLKA LAAESDSTGS ERATIRMYMA MFSDASLRPA VSDTVASILG TDSLDHEDAE ## MMLKFKLLFF SGSANASATS HYPKADDPQR FARSVSRGPS RVRRPARNSA SRPVRR ## // ## ID 040R_FRG3G Reviewed; 182 AA. ## AC Q6GZT6; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Uncharacterized protein 040R; ## DE Flags: Precursor; ## GN ORFNames=FV3-040R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09699.1; -; Genomic_DNA. ## DR RefSeq; YP_031618.1; NC_005946.1. ## DR GeneID; 2947819; -. ## DR KEGG; vg:2947819; -. ## DR Proteomes; UP000008770; Genome. ## PE 3: Inferred from homology; ## KW Reference proteome; Signal. ## FT SIGNAL 1..26 ## FT /evidence="ECO:0000255" ## FT CHAIN 27..182 ## FT /note="Uncharacterized protein 040R" ## FT /id="PRO_0000410544" ## FT COMPBIAS 88..91 ## FT /note="Poly-Thr" ## SQ SEQUENCE 182 AA; 19577 MW; FCF64F420039CF35 CRC64; ## MIRALCTIVL IAAGVAVALY LSLVYGYYMS VGVQDASWLT ALTGNRPDAK VPFFDKAVGE ## APEDKVAYTE RPYPVSSTQS PTTTQSPTTT TLKPTTMAVL ASIGATPTPV VCHNVRGDMQ ## GIACNVVMKK TVAAALKVQP EAKKDNVNAQ YRYGMWTPLR RSRSPFGVWN IPKKLAIAAP ## DV ## // ## ID 040R_IIV3 Reviewed; 83 AA. ## AC Q197C0; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 21. ## DE RecName: Full=Uncharacterized protein 040R; ## GN ORFNames=IIV3-040R; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82070.1; -; Genomic_DNA. ## DR RefSeq; YP_654612.1; NC_008187.1. ## DR SMR; Q197C0; -. ## DR GeneID; 4156350; -. ## DR KEGG; vg:4156350; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..83 ## FT /note="Uncharacterized protein 040R" ## FT /id="PRO_0000377951" ## SQ SEQUENCE 83 AA; 9524 MW; 44FB99D1E1C3E5D2 CRC64; ## MVTMAIKNFH IQDDRLKNGR GNKTMSESDY NTSDSGGWVL VRKKRDRSTR PPDVVDRWSN ## STSTFPMGLD QIKIKRNGCV NTY ## // ## ID 041L_IIV6 Reviewed; 122 AA. ## AC Q91G57; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-DEC-2001, sequence version 1. ## DT 12-AUG-2020, entry version 36. ## DE RecName: Full=Uncharacterized protein 041L; ## GN ORFNames=IIV6-041L; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## DR EMBL; AF303741; AAK81975.1; -; Genomic_DNA. ## DR RefSeq; NP_149504.1; NC_003038.1. ## DR SMR; Q91G57; -. ## DR GeneID; 1733307; -. ## DR KEGG; vg:1733307; -. ## DR Proteomes; UP000001359; Genome. ## PE 4: Predicted; ## KW Coiled coil; Reference proteome. ## FT CHAIN 1..122 ## FT /note="Uncharacterized protein 041L" ## FT /id="PRO_0000377967" ## FT COILED 46..116 ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 122 AA; 14748 MW; AC366BACEA8434BC CRC64; ## MNFIRENETK YVLSTYQSMT PKNLMEYLLK YNYDNDCVYI FNNLPKDLQK EVDDLAKEVV ## KANDEQIKAQ DEQIKANDQK LKQLDVMIEF MKQYNKQLDN DIYLLEHQLE NKRELNRQLG ## IF ## // ## ID 041R_FRG3G Reviewed; 1165 AA. ## AC Q6GZT5; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 38. ## DE RecName: Full=Uncharacterized protein 041R; ## GN ORFNames=FV3-041R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09700.1; -; Genomic_DNA. ## DR RefSeq; YP_031619.1; NC_005946.1. ## DR SMR; Q6GZT5; -. ## DR PRIDE; Q6GZT5; -. ## DR GeneID; 2947820; -. ## DR KEGG; vg:2947820; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..1165 ## FT /note="Uncharacterized protein 041R" ## FT /id="PRO_0000410549" ## SQ SEQUENCE 1165 AA; 129118 MW; FE2984658CED53A8 CRC64; ## MRVVVNAKAL EVPVGMSFTE WTRTLSPGSS PRFLAWNPVR PRTFKDVTDP FWNGKVFDLL ## GVVNGKDDLL FPASEIQEWL EYAPNVDLAE LERIFVATHR HRGMMGFAAA VQDSLVHVDP ## DSVDVTRVKD GLHKELDEHA SKAAATDVRL KRLRSVKPVD GFSDPVLIRT VFSVTVPEFG ## DRTAYEIVDS AVPTGSCPYI SAGPFVKTIP GFKPAPEWPA QTAHAEGAVF FKADAEFPDT ## KPLKDMYRKY SGAAVVPGDV TYPAVITFDV PQGSRHVPPE DFAARVAESL SLDLRGRPLV ## EMGRVVSVRL DGMRFRPYVL TDLLVSDPDA SHVMQTDELN RAHKIKGTVY AQVCGTGQTV ## SFQEKTDEDS GEAYISLRVR ARDRKGVEEL MEAAGRVMAI YSRRESEIVS FYALYDKTVA ## KEAAPPRPPR KSKAPEPTGD KADRKLLRTL APDIFLPTYS RKCLHMPVIL RGAELEDARK ## KGLNLMDFPL FGESERLTYA CKHPQHPYPG LRANLLPNKA KYPFVPCCYS KDQAVRPNSK ## WTAYTTGNAE ARRQGRIREG VMQAEPLPEG ALIFLRRVLG QETGSKFFAL RTTGVPETPV ## NAVHVAVFQR SLTAEEQAEE RAAMALDPSA MGACAQELYV EPDVDWDRWR REMGDPNVPF ## NLLKYFRALE TRYDCDIYIM DNKGIIHTKA VRGRLRYRSR RPTVILHLRE ESCVPVMTPP ## SDWTRGPVRN GILTFSPIDP ITVKLHDLYQ DSRPVYVDGV RVPPLRSDWL PCSGQVVDRA ## GKARVFVVTP TGKMSRGSFT LVTWPMPPLA APILRTDTGF PRGRSDSPLS FLGSRFVPSG ## YRRSVETGAI REITGILDGA CEACLLTHDP VLVPDPSWSD GGPPVYEDPV PSRALEGFTG ## AEKKARMLVE YAKKAISIRE GSCTQESVRS FAANGGFVVS PGALDGMKVF NPRFEAPGPF ## AEADWAVKVP DVKTARRLVY ALRVASVNGT CPVQEYASAS LVPNFYKTST DFVQSPAYTI ## NVWRNDLDQS AVKKTRRAVV DWERGLAVPW PLPETELGFS YSLRFAGISR TFMAMNHPTW ## ESAAFAALTW AKSGYCPGVT SNQIPEGEKV PTYACVKGMK PAKVLESGDG TLKLDKSSYG ## DVRVSGVMIY RASEGKPMQY VSLLM ## // ## ID 042L_FRG3G Reviewed; 85 AA. ## AC Q6GZT4; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Uncharacterized protein 042L; ## GN ORFNames=FV3-042L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09701.1; -; Genomic_DNA. ## DR RefSeq; YP_031620.1; NC_005946.1. ## DR GeneID; 2947821; -. ## DR KEGG; vg:2947821; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..85 ## FT /note="Uncharacterized protein 042L" ## FT /id="PRO_0000410556" ## SQ SEQUENCE 85 AA; 9357 MW; 6643CE66E5771626 CRC64; ## MFAPPSSLFV PATAPAPSTS GFTIPANLRR DAYVCPFATA EKERKEREQQ QPASKGLNHD ## LAAQEPLHPS LVSRFPSNYR GSFLR ## // ## ID 042R_IIV6 Reviewed; 94 AA. ## AC Q91G56; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-DEC-2001, sequence version 1. ## DT 12-AUG-2020, entry version 37. ## DE RecName: Full=Uncharacterized protein 042R; ## GN ORFNames=IIV6-042R; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## DR EMBL; AF303741; AAK81976.1; -; Genomic_DNA. ## DR RefSeq; NP_149505.1; NC_003038.1. ## DR GeneID; 1733264; -. ## DR KEGG; vg:1733264; -. ## DR Proteomes; UP000001359; Genome. ## PE 4: Predicted; ## KW Coiled coil; Reference proteome. ## FT CHAIN 1..94 ## FT /note="Uncharacterized protein 042R" ## FT /id="PRO_0000377968" ## FT COILED 1..77 ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 94 AA; 11074 MW; 78C46A2BBCC7F7ED CRC64; ## MATLQQAQQQ NNQLTQQNNQ LTQQNNQLTQ RVNELTRFLE DANRKIQIKE NVIKSSEAEN ## RKNLAEINRL HSENHRLIQQ STRTICQKCS MRSN ## // ## ID 043L_IIV6 Reviewed; 116 AA. ## AC Q91G55; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-DEC-2001, sequence version 1. ## DT 12-AUG-2020, entry version 34. ## DE RecName: Full=Uncharacterized protein 043L; ## GN ORFNames=IIV6-043L; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## DR EMBL; AF303741; AAK81977.1; -; Genomic_DNA. ## DR RefSeq; NP_149506.1; NC_003038.1. ## DR GeneID; 1733003; -. ## DR KEGG; vg:1733003; -. ## DR Proteomes; UP000001359; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..116 ## FT /note="Uncharacterized protein 043L" ## FT /id="PRO_0000377969" ## SQ SEQUENCE 116 AA; 13673 MW; 4A29B35FB716523C CRC64; ## MDLINNKLNI EIQKFCLDLE KKYNINYNNL IDLWFNKEST ERLIKCEVNL ENKIKFNQKY ## NSDTIKIMNI LFLICSDGVF GKIENNDVKP LTDEDEKICV KFGYKIMIGC LNDIPI ## // ## ID 043R_FRG3G Reviewed; 171 AA. ## AC Q6GZT3; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 37. ## DE RecName: Full=Uncharacterized protein 043R; ## GN ORFNames=FV3-043R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## CC -!- SUBCELLULAR LOCATION: Host membrane {ECO:0000305}; Single-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; AY548484; AAT09702.1; -; Genomic_DNA. ## DR RefSeq; YP_031621.1; NC_005946.1. ## DR SMR; Q6GZT3; -. ## DR GeneID; 2947822; -. ## DR KEGG; vg:2947822; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Host membrane; Membrane; Reference proteome; Transmembrane; ## KW Transmembrane helix. ## FT CHAIN 1..171 ## FT /note="Uncharacterized protein 043R" ## FT /id="PRO_0000410515" ## FT TRANSMEM 25..45 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## FT COMPBIAS 45..144 ## FT /note="Trp-rich" ## FT COMPBIAS 46..167 ## FT /note="Cys-rich" ## SQ SEQUENCE 171 AA; 19306 MW; C5952EC6311084EC CRC64; ## MEEVDGCAGP NSEAGALTAG ALTAGAFAVT AGAGVAGAGV AGVGWCSWCS WCSWCWCSWC ## SWCWCSWCWC SWCWCSWCWC SWCWCSWCWC SWCWCSWCLS KGWEDRGGLE GCKSCKGWCL ## CSHCWCWCSW CWCSWCSWCL SKGWEDRGGL EGCKSCKGWC LCSHCRCWSI N ## // ## ID 044L_IIV3 Reviewed; 335 AA. ## AC Q197B6; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 49. ## DE RecName: Full=Putative serine/threonine-protein kinase 040L; ## DE EC=2.7.11.-; ## GN ORFNames=IIV3-044L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## CC -!- SIMILARITY: Belongs to the protein kinase superfamily. Ser/Thr protein ## CC kinase family. {ECO:0000255|PROSITE-ProRule:PRU00159}. ## DR EMBL; DQ643392; ABF82074.1; -; Genomic_DNA. ## DR RefSeq; YP_654616.1; NC_008187.1. ## DR PRIDE; Q197B6; -. ## DR GeneID; 4156354; -. ## DR KEGG; vg:4156354; -. ## DR Proteomes; UP000001358; Genome. ## DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. ## DR GO; GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW. ## DR InterPro; IPR011009; Kinase-like_dom_sf. ## DR InterPro; IPR000719; Prot_kinase_dom. ## DR InterPro; IPR008271; Ser/Thr_kinase_AS. ## DR Pfam; PF00069; Pkinase; 1. ## DR SMART; SM00220; S_TKc; 1. ## DR SUPFAM; SSF56112; SSF56112; 1. ## DR PROSITE; PS50011; PROTEIN_KINASE_DOM; 1. ## DR PROSITE; PS00108; PROTEIN_KINASE_ST; 1. ## PE 3: Inferred from homology; ## KW ATP-binding; Kinase; Nucleotide-binding; Reference proteome; ## KW Serine/threonine-protein kinase; Transferase. ## FT CHAIN 1..335 ## FT /note="Putative serine/threonine-protein kinase 040L" ## FT /id="PRO_0000377909" ## FT DOMAIN 33..329 ## FT /note="Protein kinase" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00159" ## FT NP_BIND 39..47 ## FT /note="ATP" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00159" ## FT ACT_SITE 196 ## FT /note="Proton acceptor" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00159, ## FT ECO:0000255|PROSITE-ProRule:PRU10027" ## FT BINDING 62 ## FT /note="ATP" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00159" ## SQ SEQUENCE 335 AA; 39427 MW; 170854A423741F50 CRC64; ## MPLSVFAEEF AEKSVKRYIG QGLWLPCNLS DYYYYQEFHD EGGYGSIHRV MDKATGNEVI ## MKHSYKLDFS PGILPEWWSK FGSLTDDLRE RVVSNHQLRV SREAQILVQA STVLPEMKLH ## DYFDDGESFI LIMDYGGRSL ENIASSHKKK ITNLVRYRAY KGNWFYKNWL KQVVDYMIKI ## YHKIKILYDI GIYHNDLKPE NVLVDGDHIT IIDFGVADFV PDENERKTWS CYDFRGTIDY ## IPPEVGTTGS FDPWHQTVWC FGVMLYFLSF MEYPFHIDNQ FLEYALEGEK LDKLPEPFAQ ## LIRECLSVDP DKRPLTSLLD RLTELHHHLQ TIDVW ## // ## ID 044R_FRG3G Reviewed; 61 AA. ## AC Q6GZN9; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Uncharacterized protein 044R; ## GN ORFNames=FV3-044R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09746.1; -; Genomic_DNA. ## DR RefSeq; YP_031665.1; NC_005946.1. ## DR PRIDE; Q6GZN9; -. ## DR GeneID; 2947805; -. ## DR KEGG; vg:2947805; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..61 ## FT /note="Uncharacterized protein 044R" ## FT /id="PRO_0000410526" ## SQ SEQUENCE 61 AA; 6780 MW; 41FE2D91CA2E0C7C CRC64; ## MVVRLAVRAN MPKDSLARDS LPKDSLARDF LSDKTSPTDG TQSSDRYLLK IVTAVDYVHL ## T ## // ## ID 044R_IIV6 Reviewed; 65 AA. ## AC Q91G54; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-DEC-2001, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Uncharacterized protein 044R; ## GN ORFNames=IIV6-044R; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## DR EMBL; AF303741; AAK81978.1; -; Genomic_DNA. ## DR RefSeq; NP_149507.1; NC_003038.1. ## DR GeneID; 1732971; -. ## DR KEGG; vg:1732971; -. ## DR Proteomes; UP000001359; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..65 ## FT /note="Uncharacterized protein 044R" ## FT /id="PRO_0000377970" ## SQ SEQUENCE 65 AA; 8129 MW; 20C3027198B98279 CRC64; ## MYLYQKIKNC LLLTMYQKKN KSHMYDILQS YLYYQKPIPK NLYSHPKKNL YLNIHHYKNI ## NKDLM ## // ## ID 045L_FRG3G Reviewed; 136 AA. ## AC Q6GZT1; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 31. ## DE RecName: Full=Uncharacterized protein 045L; ## GN ORFNames=FV3-045L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09704.1; -; Genomic_DNA. ## DR RefSeq; YP_031623.1; NC_005946.1. ## DR GeneID; 2947824; -. ## DR KEGG; vg:2947824; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..136 ## FT /note="Uncharacterized protein 045L" ## FT /id="PRO_0000410558" ## SQ SEQUENCE 136 AA; 15551 MW; A85E73892FA3AB73 CRC64; ## MDDVEYRTEF SARERAGGDI EEGLELFGPA TFKGMEGDPV QRFYNGIESA GRNLIRDGHI ## KLNKQEQTRL LSSVLRITYP NYKNPMGTVL GFYVTDGGRG PIDKGRLSHV QSFMEEVTDM ## DLRDLIRYCR LWLALK ## // ## ID 045R_IIV3 Reviewed; 90 AA. ## AC Q197B5; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 23. ## DE RecName: Full=Uncharacterized protein 045R; ## GN ORFNames=IIV3-045R; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82075.1; -; Genomic_DNA. ## DR RefSeq; YP_654617.1; NC_008187.1. ## DR GeneID; 4156355; -. ## DR KEGG; vg:4156355; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..90 ## FT /note="Uncharacterized protein 045R" ## FT /id="PRO_0000377952" ## SQ SEQUENCE 90 AA; 10285 MW; 963DB175B898F5D7 CRC64; ## MYKCSQGAMN TEKVMEKFVI QSRFREMYPD KAKAIAGMTV PARYADSVED MVAFANEKIR ## VQKAKVEAEK NARQAMGAPA KFDKYGKYKY ## // ## ID 046L_FRG3G Reviewed; 81 AA. ## AC Q6GZT0; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 29. ## DE RecName: Full=Uncharacterized protein 046L; ## GN ORFNames=FV3-046L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09705.1; -; Genomic_DNA. ## DR RefSeq; YP_031624.1; NC_005946.1. ## DR GeneID; 2947825; -. ## DR KEGG; vg:2947825; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..81 ## FT /note="Uncharacterized protein 046L" ## FT /id="PRO_0000410563" ## SQ SEQUENCE 81 AA; 8586 MW; 9B3059207E141CEA CRC64; ## MYSVRNSGCS VGCSPRQGAS PIMFGPSLGA MLSAPVVRAS APVVRASSPV VKRKSLVKRK ## SPVKRSPLKK RSQMRTSPCE A ## // ## ID 047L_FRG3G Reviewed; 138 AA. ## AC Q6GZS9; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 31. ## DE RecName: Full=Uncharacterized protein 047L; ## GN ORFNames=FV3-047L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09706.1; -; Genomic_DNA. ## DR RefSeq; YP_031625.1; NC_005946.1. ## DR GeneID; 2947826; -. ## DR KEGG; vg:2947826; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..138 ## FT /note="Uncharacterized protein 047L" ## FT /id="PRO_0000410551" ## SQ SEQUENCE 138 AA; 15542 MW; 700F85EC2FA87636 CRC64; ## MHTISDWLNL NAPVRCFHVR QLSESEWRFT VNDTIRVVAS VDGPWTVDAK GVEDLKMHKL ## YVPGPAKCWT RARDKAMAAA LAEAVSESET CAADIVRPAV AKNTPRRPVV KRRVDAVKPA ## APDNLESWTK DDWYELDL ## // ## ID 048L_FRG3G Reviewed; 83 AA. ## AC Q6GZS8; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 31. ## DE RecName: Full=Uncharacterized protein 048L; ## GN ORFNames=FV3-048L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09707.1; -; Genomic_DNA. ## DR RefSeq; YP_031626.1; NC_005946.1. ## DR GeneID; 2947827; -. ## DR KEGG; vg:2947827; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..83 ## FT /note="Uncharacterized protein 048L" ## FT /id="PRO_0000410516" ## SQ SEQUENCE 83 AA; 9566 MW; 52A13E9E325273F6 CRC64; ## MTAKTLDPSD YNVRDDSTTG MFTPVDRFVC DPESDRIIVR KIPPEWTIGN SMRFVHFTKE ## FTQTFDPSES PSNIVRHTNG KKK ## // ## ID 049L_FRG3G Reviewed; 249 AA. ## AC Q6GZS7; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 56. ## DE RecName: Full=Putative SAP domain-containing protein 049L; ## GN ORFNames=FV3-049L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09708.1; -; Genomic_DNA. ## DR RefSeq; YP_031627.1; NC_005946.1. ## DR GeneID; 2947828; -. ## DR KEGG; vg:2947828; -. ## DR Proteomes; UP000008770; Genome. ## DR Gene3D; 1.10.720.30; -; 1. ## DR InterPro; IPR003034; SAP_dom. ## DR InterPro; IPR036361; SAP_dom_sf. ## DR Pfam; PF02037; SAP; 1. ## DR SMART; SM00513; SAP; 1. ## DR SUPFAM; SSF68906; SSF68906; 1. ## DR PROSITE; PS50800; SAP; 1. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..249 ## FT /note="Putative SAP domain-containing protein 049L" ## FT /id="PRO_0000410583" ## FT DOMAIN 119..153 ## FT /note="SAP" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00186" ## SQ SEQUENCE 249 AA; 27466 MW; CBC49F62CBC8E576 CRC64; ## MAAPKAEGED KPKRVRKSRA KPKPETKEVK KPKSKEFCTA DDSSDDYNEV KPSPAMIALM ## AVKEIPESED VPDKSDSEAE APVPAIVKKR RTPPKKAESS DDKKLDEATG EQVIDEDALS ## KLTIQTLKGM CKTRNLKISG NKAALVQRLI EADGIAHIIP TTATVVQKVK KTKRPAVFSK ## VDSELKLIPC PGREHMLMDE ATGLVFLDED PSTAVGFIEH GEVFGLDSEH MTVCKNMGIR ## YSWTEDYLC ## // ## ID 049L_IIV6 Reviewed; 123 AA. ## AC Q91G50; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-DEC-2001, sequence version 1. ## DT 12-AUG-2020, entry version 47. ## DE RecName: Full=Transmembrane protein 049L; ## GN ORFNames=IIV6-049L; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; AF303741; AAK81982.1; -; Genomic_DNA. ## DR RefSeq; NP_149512.1; NC_003038.1. ## DR GeneID; 1733420; -. ## DR KEGG; vg:1733420; -. ## DR Proteomes; UP000001359; Genome. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## DR GO; GO:0034257; F:nicotinamide riboside transmembrane transporter activity; IEA:InterPro. ## DR InterPro; IPR006419; NMN_transpt_PnuC. ## DR Pfam; PF04973; NMN_transporter; 1. ## PE 4: Predicted; ## KW Membrane; Reference proteome; Transmembrane; Transmembrane helix. ## FT CHAIN 1..123 ## FT /note="Transmembrane protein 049L" ## FT /id="PRO_0000377971" ## FT TRANSMEM 67..87 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## FT TRANSMEM 104..121 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 123 AA; 14309 MW; 225DED35F902EAD6 CRC64; ## MDKIEELKIE ELKIEIPQRK TKFFHDSENS DKRDEEETLN PTITSKAKIL IKSKNFWIET ## LIFVISVFGA LCVAFGIMLI GFLLWLVSNT ISILYFIKQK QYPLSLQQMV FLITTCIGVY ## NNV ## // ## ID 049R_IIV3 Reviewed; 683 AA. ## AC Q197B1; ## DT 03-NOV-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 39. ## DE RecName: Full=Uncharacterized protein 049R; ## GN ORFNames=IIV3-049R; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82079.1; -; Genomic_DNA. ## DR RefSeq; YP_654621.1; NC_008187.1. ## DR SMR; Q197B1; -. ## DR PRIDE; Q197B1; -. ## DR GeneID; 4156299; -. ## DR KEGG; vg:4156299; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Coiled coil; Reference proteome. ## FT CHAIN 1..683 ## FT /note="Uncharacterized protein 049R" ## FT /id="PRO_0000387982" ## FT COILED 62..124 ## FT /evidence="ECO:0000255" ## FT COILED 155..259 ## FT /evidence="ECO:0000255" ## FT COILED 346..376 ## FT /evidence="ECO:0000255" ## FT COMPBIAS 92..97 ## FT /note="Poly-Ser" ## FT COMPBIAS 128..290 ## FT /note="Thr-rich" ## FT COMPBIAS 414..417 ## FT /note="Poly-Thr" ## SQ SEQUENCE 683 AA; 76323 MW; 2C2B2EB56BCEB6D8 CRC64; ## MLRIENTVCK SACRVDSATA QPVYSSFDGE NFKAEIHSKL DSFERKLNAS PTYRDEEGGG ## NPEHYETLSQ EINDLQSQIE NLSLEVENLQ GSSSSPSNVA AALAELSQSI RTIKEQLEAN ## RKERYNLTVT VANLTAAVNA AKKTGSESTT ATATTTTNYE TQLKAFEAQI KALDNQLQTQ ## KNLVQTTSVE AKNDRDSLRK TIEVIRLTVK TLQDQVESQT GPKKRRKSPI ENQPTAGSEL ## ATLTTNLTFL TQRVEKLSQG VATHTTAMFT LEETMKKVHT TLQEATASNT NNIDAIRTRV ## QELADKIALF DQVQYSVGYE MAKKNPDSTK LRTDLDSAIS TVNEEKKSLL TVKDSVQSLK ## TQLDELKRTL ENDGDVSSLR QTVHDMASSI RDETATIYNK INALEEGLKR GGQTTTTPLT ## QLQTRVEEID KTIVKWNNQH GEWTTRLNKL EAGVSNNQTL MNRFIQQVNG DVNPLKELPA ## ELETFKMTIT NTWAQLNKKF LDFSAKTDTS VDNFTKKFTE IHPQIASLVD KMDQQIRDNP ## HTTEKLMDEI RQLKSAMTRL GTQSSGKPIF SINTKSSYNE KSKKTIFGHP GIIFPETVKI ## SSIYITLAAK EADGKEDARL FELTATSTHN NITSTIKQFE KKCTEETILE DYNPPLVIDA ## QTKLVLSCNQ KVFGVAIFTL QYS ## // ## ID 050L_FRG3G Reviewed; 229 AA. ## AC Q6GZS6; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 30. ## DE RecName: Full=Uncharacterized protein 050L; ## GN ORFNames=FV3-050L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09709.1; -; Genomic_DNA. ## DR RefSeq; YP_031628.1; NC_005946.1. ## DR PRIDE; Q6GZS6; -. ## DR GeneID; 2947829; -. ## DR KEGG; vg:2947829; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..229 ## FT /note="Uncharacterized protein 050L" ## FT /id="PRO_0000410571" ## FT COMPBIAS 101..206 ## FT /note="Glu-rich" ## FT COMPBIAS 109..193 ## FT /note="Gln-rich" ## SQ SEQUENCE 229 AA; 25692 MW; 2677EE1D7CF6C477 CRC64; ## MQVYSPSKIS QQLETFLNSV ANGLGHTMSH AMSQTFSETI VASVAKKAPK TSVLAAAQAA ## MQAEDKVSKP KKVKKTKSYA DAAPKRVKKV KAPKEDTVVS EPEEAVVEQQ EKQQPEKAVV ## EQQEKQQPEE AVVEQQEKQQ PEEAVVEQQE KQQPEEAVVE SEQPEQPEQP ERQQQAQPER ## QQQAQPERQQ QAQPEEAEDA EQEPVEQPTA KPKKVRKTQT ESEDKPKRG ## // ## ID 051R_FRG3G Reviewed; 561 AA. ## AC Q6GZS5; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 07-OCT-2020, entry version 34. ## DE RecName: Full=Uncharacterized protein 051R; ## GN ORFNames=FV3-051R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09710.1; -; Genomic_DNA. ## DR RefSeq; YP_031629.1; NC_005946.1. ## DR PRIDE; Q6GZS5; -. ## DR GeneID; 2947830; -. ## DR KEGG; vg:2947830; -. ## DR Proteomes; UP000008770; Genome. ## DR InterPro; IPR043657; DUF5876. ## DR Pfam; PF19204; DUF5876; 1. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..561 ## FT /note="Uncharacterized protein 051R" ## FT /id="PRO_0000410555" ## FT COMPBIAS 6..9 ## FT /note="Poly-Thr" ## SQ SEQUENCE 561 AA; 61680 MW; 2A7FC9B8A0C82B9F CRC64; ## MTVRITTTTG YPHGLLNPTV PLPMSRYTLV QETAQDILYT PMGKELALMG TCTKTECKYV ## RMQEDAHLLA EASKKALTMR LEQNPELKDL LASSGSQPIV YGDTRLVAHL TLLRGVSVLS ## PEGMVFSEDA MRKLYKGTID MFVSDPSSLL NVDRATLTLE SLRAMVKASG NWPSTSATAA ## VAIPEAPVTG VSVSDKVVME HSASVYATQK MDFERSLLIR HLLAMDPAAE ADVSHLVSRM ## DARTRAASSR LAAMYHDGLL DSAVTDGLVP PDQRLLEPMS TPSTPEVHAP QDGMSFEVPH ## VLTFAGGPVK VDDHVYDTPL HYAYNLAIRR MFADFGEGDL DDVHVSQVSV IYSDMLDKWI ## DAMYPQTLWR LMTEKFSGNQ SCLAVLLSTD GADVKWTGRT EEESFLISDM MGQIKTGWIR ## SGPPSSSPLS SADIAGTDFF YGWLSYMSRT YATALNVISE MTLARLLDLP DIPEEVRQPT ## DREQAALGSD YVRSAWRVCY SEFVHKFEGK NLFASVDYCV KTHLKALKVS RDSVTGTAKT ## LSAKGYGTLI ALPVIRLAMK S ## // ## ID 052L_FRG3G Reviewed; 355 AA. ## AC Q6GZS4; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 71. ## DE RecName: Full=Uncharacterized protein 052L; ## GN ORFNames=FV3-052L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## CC -!- SIMILARITY: Belongs to the 3-beta-HSD family. {ECO:0000305}. ## DR EMBL; AY548484; AAT09711.1; -; Genomic_DNA. ## DR RefSeq; YP_031630.1; NC_005946.1. ## DR PRIDE; Q6GZS4; -. ## DR GeneID; 2947831; -. ## DR KEGG; vg:2947831; -. ## DR KO; K12408; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0003854; F:3-beta-hydroxy-delta5-steroid dehydrogenase activity; IEA:InterPro. ## DR GO; GO:0006694; P:steroid biosynthetic process; IEA:InterPro. ## DR InterPro; IPR002225; 3Beta_OHSteriod_DH/Estase. ## DR InterPro; IPR036291; NAD(P)-bd_dom_sf. ## DR Pfam; PF01073; 3Beta_HSD; 1. ## DR SUPFAM; SSF51735; SSF51735; 1. ## PE 3: Inferred from homology; ## KW Oxidoreductase; Reference proteome. ## FT CHAIN 1..355 ## FT /note="Uncharacterized protein 052L" ## FT /id="PRO_0000410499" ## SQ SEQUENCE 355 AA; 39320 MW; 951752CDD6CFC920 CRC64; ## MVKYVVTGGC GFLGSHIVKC ILKYAPEVTE VVAYDINISH IMTMWSSKLK VVRGDVMDVM ## ALAKAVDGAD VVIHTAGIVD VWYRHTDDEI YRVNVSGTKN VLMCCINAGV QVLVNTSSME ## VVGPNTTSGV FVRGGERTPY NTVHDHVYPL SKDRAEKLVK HYTGVAAAPG MPALKTCSLR ## PTGIYGEGCD LLEKFFHDTV NAGNVAYGGS PPDSEHGRVY VGNVAWMHLL AARALLAGGE ## SAHKVNGEAF FCYDDSPYMS YDAFNAELFE DRGFGYVYVP YWVMKPMAAY NDLKRKFLGC ## FGVKRSPILN SYTLALARTS FTVKTSKARR MFGYMPLYEW SEAKRRTKDW ISTLK ## // ## ID 053L_IIV3 Reviewed; 142 AA. ## AC Q197A7; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 25. ## DE RecName: Full=Uncharacterized protein 053L; ## GN ORFNames=IIV3-053L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82083.1; -; Genomic_DNA. ## DR RefSeq; YP_654625.1; NC_008187.1. ## DR SMR; Q197A7; -. ## DR PRIDE; Q197A7; -. ## DR GeneID; 4156303; -. ## DR KEGG; vg:4156303; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..142 ## FT /note="Uncharacterized protein 053L" ## FT /id="PRO_0000377953" ## SQ SEQUENCE 142 AA; 16767 MW; 9E66533145F174CB CRC64; ## MEQYLQAFEF VEEMVVLPKY LSWELYHHLA VLLREKYPKT YKNKGYIFNI KVKSILDNRI ## TPTGQIVLVV MFQSDLYVPQ VGHVFTERIR VNSVDDRYQW ITIEPLTVFL RSNIPYKPNT ## LVTVQICSIK MDNTLCFGTI LD ## // ## ID 053R_FRG3G Reviewed; 522 AA. ## AC Q6GZS3; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 39. ## DE RecName: Full=Putative myristoylated protein 053R; ## GN ORFNames=FV3-053R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## RN [2] ## RP FUNCTION. ## RX PubMed=20633916; DOI=10.1016/j.virol.2010.06.034; ## RA Whitley D.S., Yu K., Sample R.C., Sinning A., Henegar J., Norcross E., ## RA Chinchar V.G.; ## RT "Frog virus 3 ORF 53R, a putative myristoylated membrane protein, is ## RT essential for virus replication in vitro."; ## RL Virology 405:448-456(2010). ## CC -!- FUNCTION: May play a critical role in virion formation. Essential for ## CC virus replication in vitro. {ECO:0000269|PubMed:20633916}. ## CC -!- SUBCELLULAR LOCATION: Host membrane {ECO:0000305}; Multi-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; AY548484; AAT09712.1; -; Genomic_DNA. ## DR RefSeq; YP_031631.1; NC_005946.1. ## DR GeneID; 2947832; -. ## DR KEGG; vg:2947832; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## DR InterPro; IPR003472; Virion_mem_poxvirus_L1. ## DR Pfam; PF02442; L1R_F9L; 1. ## PE 3: Inferred from homology; ## KW Host membrane; Lipoprotein; Membrane; Myristate; Reference proteome; ## KW Transmembrane; Transmembrane helix. ## FT INIT_MET 1 ## FT /note="Removed" ## FT /evidence="ECO:0000255" ## FT CHAIN 2..522 ## FT /note="Putative myristoylated protein 053R" ## FT /id="PRO_0000410511" ## FT TRANSMEM 193..213 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## FT TRANSMEM 217..237 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## FT LIPID 2 ## FT /note="N-myristoyl glycine; by host" ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 522 AA; 54728 MW; C36F70EF7FE29FAA CRC64; ## MGAAESINTV NIVTKAYAKI MTTMVTDQDI TADQSQVFSI DHVKGDVVIK GDVFTQMLVI ## NLASLMKAIA TQSAQDQLID NIAQQAQAAV SGLNLAQYAY VSNNIDRLIT ACVQMSTDMR ## VSCKSKVTMT QSFSVTDVEG DVRVTGVKFN QFANILSSCA MDASVNNDQA RDIVSQIKQR ## GDAKASGLDP TTLIVIIVLV MVGAPMGAGF MAGRRAIGPL LASVGLIGGG AVALGYVPRP ## VKIEGFSSDP DFTLAQPAAT VKGLTFTAAV AKLKSTDGYG ALFWKNYDVK GTTAVKLQET ## LSYFAPAGYD PASWAGVGDS APPFRIFPGL YQGKGDPGAR PRAAYGYAGP VAGPKKGDAY ## LDGDTGSYYV LGDSWKMRGT ISGHQNGRTD YWGTVDPTTT AALTGSERYI WVDPFTLVKS ## TVWLFTGSPK KWTQQQTAPL DIPLTNTPSD FNVWVYKDDT AVQAVKWSSV GAGVAGAALT ## ASALLMPDSV ASSEMSPAVG TGTPAIGTGS PAVGTGFPAH RG ## // ## ID 054L_FRG3G Reviewed; 76 AA. ## AC Q6GZS2; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 29. ## DE RecName: Full=Uncharacterized protein 054L; ## GN ORFNames=FV3-054L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09713.1; -; Genomic_DNA. ## DR RefSeq; YP_031632.1; NC_005946.1. ## DR GeneID; 2947833; -. ## DR KEGG; vg:2947833; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..76 ## FT /note="Uncharacterized protein 054L" ## FT /id="PRO_0000410573" ## SQ SEQUENCE 76 AA; 8786 MW; E7568044A29BB62B CRC64; ## MPLRLCQGRK DRASDPVRDD GSPPRLFVSQ VCRRAPKDPQ GFQGHRGGQN VGDCSPIFHQ ## EKKQVMRRFY SLCEWK ## // ## ID 054L_IIV3 Reviewed; 309 AA. ## AC Q197A6; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 23. ## DE RecName: Full=Uncharacterized protein 054L; ## GN ORFNames=IIV3-054L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82084.1; -; Genomic_DNA. ## DR RefSeq; YP_654626.1; NC_008187.1. ## DR GeneID; 4156304; -. ## DR KEGG; vg:4156304; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..309 ## FT /note="Uncharacterized protein 054L" ## FT /id="PRO_0000377954" ## SQ SEQUENCE 309 AA; 35090 MW; 06D3B067F77A9AE5 CRC64; ## MASEATVESV ETKVESPIVE SPVDQGLLES IKNFMDDLAV VTENENFQDY HTIVRRIDET ## KVKSYNKLVG GFREFFSLNK TALMEGNFEG LIEPHISYKT ESGSFFFNFQ TTYLETDEAN ## QEIIKEHLNH IWAQIRSENK CPEQLYIDEI FQKLKNKDQL TMDDQLIRDL FTKFQTANFN ## VTALIRAGCS KAREFLTNNG SQKSSSTFRL IETIENVNVD NFTQMDFMAL ISKISAIFSE ## SGESNPLNLC LSSLFGGGNT NQPSLTSMFP FPTPPLPDNV LLDNLDQLTL EQQSETTGDD ## DHHSFEPEK ## // ## ID 055L_FRG3G Reviewed; 431 AA. ## AC Q6GZS1; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 63. ## DE RecName: Full=Putative helicase 055L; ## DE EC=3.6.4.-; ## GN ORFNames=FV3-055L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09714.1; -; Genomic_DNA. ## DR RefSeq; YP_031633.1; NC_005946.1. ## DR SMR; Q6GZS1; -. ## DR GeneID; 2947754; -. ## DR KEGG; vg:2947754; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. ## DR GO; GO:0003677; F:DNA binding; IEA:InterPro. ## DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW. ## DR InterPro; IPR006935; Helicase/UvrB_N. ## DR InterPro; IPR014001; Helicase_ATP-bd. ## DR InterPro; IPR027417; P-loop_NTPase. ## DR Pfam; PF04851; ResIII; 1. ## DR SMART; SM00487; DEXDc; 1. ## DR SUPFAM; SSF52540; SSF52540; 2. ## DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. ## PE 4: Predicted; ## KW ATP-binding; Helicase; Hydrolase; Nucleotide-binding; Reference proteome. ## FT CHAIN 1..431 ## FT /note="Putative helicase 055L" ## FT /id="PRO_0000410582" ## FT DOMAIN 73..222 ## FT /note="Helicase ATP-binding" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541" ## FT NP_BIND 86..93 ## FT /note="ATP" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541" ## FT MOTIF 175..178 ## FT /note="DEAH box" ## SQ SEQUENCE 431 AA; 47410 MW; 8A626D7E3C8FD2B2 CRC64; ## MAKLLRLNAI DGDMPGAGEA DLFTLAPGGK AYVPFAWGSR VLGCKPPPAH GAARERGSVS ## LRPHQKGVLK EAWGHVTSKG YCMLKCPPGF GKTFMALELW RRLGLPALVL TNRRVLATQW ## RDSATRFLPD SRVFTSGTPP PDALPRDLYV TGPASLRNRR IKAKDSPAKF LLIVDEAHQL ## TSPVSCRVLL SVRPSHLLGL SATPMRYDDY HAALGAFFGR EDSTVDRVDP RPHEVEILST ## GVHIEPEFSK ITGKMDWNSV IKAQSDNPER DAALADRMLL RPDVKWLVLC KRVDHVKRMA ## ETLSSRSGKK VDVLHGSKDE WDRDAWCVVG TYSKAGTGFD ACERTGLCLA ADVDRYFEQC ## LGRLRANGGT VLDPVDDLGV LRKHSKNREA VYIAAGCTIK KTKCDASRPS QSTPTPTGSS ## QPAPRTRRPQ R ## // ## ID 055R_FRG3G Reviewed; 379 AA. ## AC Q67475; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 01-NOV-1996, sequence version 1. ## DT 12-AUG-2020, entry version 48. ## DE RecName: Full=Uncharacterized protein 055R; ## GN ORFNames=FV3-055R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09715.1; -; Genomic_DNA. ## DR EMBL; X82828; CAA58035.1; -; Genomic_DNA. ## DR PIR; S49999; S49999. ## DR RefSeq; YP_031634.1; NC_005946.1. ## DR SMR; Q67475; -. ## DR GeneID; 2947755; -. ## DR KEGG; vg:2947755; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..379 ## FT /note="Uncharacterized protein 055R" ## FT /id="PRO_0000410506" ## SQ SEQUENCE 379 AA; 40096 MW; A173DD836FA572F5 CRC64; ## MLPQNSQVVH GVQDGPPVGP QPAQALLKVP VDVRRQAQAG PLAGVEPRPR LGVGAHHTPG ## VPVPLILGAV QHVHLLPGPR GQCLGHPLDV VHPLAQHQPL YVGPEEHPVG QGGVPLGVIG ## LGLDHRVPVH LARDLAKLGL YVHARAEYLH LVGPGVDPVH RAVLPAEKGP QCSVVVVVPH ## GCSAQTQQVR GPHRQEDPTR HGGRQLVGLI HNQEKFCGRV LGLDPPVSQR SRTRHIQVPG ## QGVGRRGAGC KDPRVRKEPG RRVPPLSRQH PPVCQDEGGQ PQPPPQLQGH EGLAEAGRAL ## EHAVPLGGDV APGLLQDPFL VRSERDGAPL PGCAVSGRRF ASQDPGTPGE GDVGLSPGRE ## GKQVRFPRAG HVSIYRVEP ## // ## ID 056R_FRG3G Reviewed; 145 AA. ## AC Q6GZR9; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 29. ## DE RecName: Full=Uncharacterized protein 056R; ## GN ORFNames=FV3-056R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09716.1; -; Genomic_DNA. ## DR RefSeq; YP_031635.1; NC_005946.1. ## DR GeneID; 2947756; -. ## DR KEGG; vg:2947756; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..145 ## FT /note="Uncharacterized protein 056R" ## FT /id="PRO_0000410561" ## FT COMPBIAS 115..118 ## FT /note="Poly-Arg" ## SQ SEQUENCE 145 AA; 17056 MW; 6B1351E8A399B981 CRC64; ## MGVYSPAPRT PRGPWNIRIR FLSWSNSFLL EVKKNYGDVY LCDVCPVRPP GLQAPREQPV ## LHDRKVLHLY GQDSGVRDVQ EVLWNPVSHQ EVRRDNHGVL HGRRRARVRQ AEEGRRRRQE ## GHRFRDWERL HQRVEGCPGL QGHGF ## // ## ID 056R_IIV6 Reviewed; 283 AA. ## AC O55703; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-JUN-1998, sequence version 1. ## DT 12-AUG-2020, entry version 48. ## DE RecName: Full=Uncharacterized protein 056R; ## GN ORFNames=IIV6-056R; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; AF303741; AAB94414.1; -; Genomic_DNA. ## DR PIR; T03040; T03040. ## DR RefSeq; NP_149519.1; NC_003038.1. ## DR GeneID; 1733282; -. ## DR KEGG; vg:1733282; -. ## DR Proteomes; UP000001359; Genome. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Coiled coil; Membrane; Reference proteome; Transmembrane; ## KW Transmembrane helix. ## FT CHAIN 1..283 ## FT /note="Uncharacterized protein 056R" ## FT /id="PRO_0000377972" ## FT TRANSMEM 13..35 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## FT COILED 37..66 ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 283 AA; 31573 MW; A5833A7EC5F6934C CRC64; ## MEQKIDKKNS YSFGITSSTT VHVLGEVVAI GGILYYTHSQ VNQLNTKIAS LEKQILDLTN ## ILKHLSPHSF QQLQSSPTTQ STPPLPQSTP QSQQSQQSAV LPQRPSFLGG STPKESQSFP ## GVETRSLGEK TTRGKLKSPH PSQIPVTQEN FHYPYQTMNK TMRWEFLKPV ESDESEDETN ## CQNGVCTLQK QEKNVTFNGS VEQLKYGNFS PQRSTKTMIG SPSIRPLIPH ESIESVSESI ## ESSQDQSFSS RETISGNFKS KDDHQLSESE INQLVSKAIR TKK ## // ## ID 057L_IIV3 Reviewed; 130 AA. ## AC Q197A3; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 21. ## DE RecName: Full=Uncharacterized protein 057L; ## GN ORFNames=IIV3-057L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82087.1; -; Genomic_DNA. ## DR RefSeq; YP_654629.1; NC_008187.1. ## DR GeneID; 4156307; -. ## DR KEGG; vg:4156307; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..130 ## FT /note="Uncharacterized protein 057L" ## FT /id="PRO_0000377955" ## SQ SEQUENCE 130 AA; 14846 MW; 0A95A328C7ABA865 CRC64; ## MFKIYRTSCM GQHQSQFLHS GTVVQTVDGV TTTSFFQPCL VFPFSIEIIS ISLVSLNTTN ## ETKLIKMSIM ENSELVDYNE SAYTLAHLPG KQMTYLKYPA PFTIRQHQPF FFVHHGDLGD ## ASLTLEYRIK ## // ## ID 057R_FRG3G Reviewed; 498 AA. ## AC Q6GZR8; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 53. ## DE RecName: Full=Putative phosphotransferase 057R; ## GN ORFNames=FV3-057R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09717.1; -; Genomic_DNA. ## DR RefSeq; YP_031636.1; NC_005946.1. ## DR GeneID; 2947757; -. ## DR KEGG; vg:2947757; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. ## DR InterPro; IPR011009; Kinase-like_dom_sf. ## DR SUPFAM; SSF56112; SSF56112; 1. ## PE 4: Predicted; ## KW Reference proteome; Transferase. ## FT CHAIN 1..498 ## FT /note="Putative phosphotransferase 057R" ## FT /id="PRO_0000410527" ## FT COMPBIAS 115..120 ## FT /note="Poly-Ala" ## SQ SEQUENCE 498 AA; 53585 MW; 50020F084227C698 CRC64; ## MAMVSNVKYF ADALQGTQGK VGTFTVLGEN VFFKRGDGTD TVCGLEMVAG RILRARSDVH ## FCEPKYFVEM DDGEKVCSFE LLDCKPLGSM APGRKGKKSV GSVTQYLSGL YQTFAAAAAA ## HSVGVVHSDL HTGNVMLCPE PVSHYVYNLG GGEMLSLETN GVRAVVVDLG MARIPGKNTV ## ACDIFVHVGH VVNGRPDYAA DVRTLTLGSC YDMVMMCASG KPSLEERMLC YEVMAAYNNL ## FAGVCAPSKG GWFVDHYPSM CAVMEATIPD SVASRGGGSW LLAVANMCKL LVPRPYVKRA ## CGKEKAHAMW MTLFTELGLT AKKSISKVDM VDAVQRLRAI ADGSEIPPAS LMKAACAVGL ## LTASVAEACY EKVEEIKASH VGMLRWKDAL DAWVRLPVRC SGSVPKLGST VILHTESGTE ## ETVVTQSMLR QIVKTREALD MAQAASDAVW TDTAYYEADD ELMKGAHEES AEDFATSFLK ## GGTTGPIAKR CRLILKSL ## // ## ID 058R_FRG3G Reviewed; 237 AA. ## AC Q6GZR7; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 30. ## DE RecName: Full=Uncharacterized protein 058R; ## GN ORFNames=FV3-058R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09718.1; -; Genomic_DNA. ## DR RefSeq; YP_031637.1; NC_005946.1. ## DR PRIDE; Q6GZR7; -. ## DR GeneID; 2947758; -. ## DR KEGG; vg:2947758; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..237 ## FT /note="Uncharacterized protein 058R" ## FT /id="PRO_0000410566" ## FT COMPBIAS 106..113 ## FT /note="Poly-Arg" ## SQ SEQUENCE 237 AA; 26254 MW; A6F74DAD9CA952E0 CRC64; ## MEIRDTTVGL DRPVQSGAWD PGATREQLAL AGISGRCDLG GRDEDLWSRK SQKDETFKDC ## ERRRGGEAPR LLCDKWRRDR EAEAVRRRVQ SQRRQGGRED PDGPARVRGR RRRVAVCGHS ## PDRGPAREEH KGPAGGSDHK DLGHHKGPEV GSGLRGPQAR QVCGRSRGHE VQRVQKGLRQ ## GVQGHGCREV ALDARLCLVR VLGRSGQKGR HGRLSVASRR LDGQEKVEKR GLFSLGA ## // ## ID 059L_FRG3G Reviewed; 352 AA. ## AC Q6GZR6; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 31. ## DE RecName: Full=Uncharacterized protein 059L; ## GN ORFNames=FV3-059L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09719.1; -; Genomic_DNA. ## DR RefSeq; YP_031638.1; NC_005946.1. ## DR GeneID; 2947759; -. ## DR KEGG; vg:2947759; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..352 ## FT /note="Uncharacterized protein 059L" ## FT /id="PRO_0000410531" ## SQ SEQUENCE 352 AA; 39834 MW; 396052EE69E68424 CRC64; ## MPAQKRMSRY AYLVNKVAGP TLCGVFYGKY VEASDQAVST CMAWFKIVVI TKRVSAREWQ ## EKGATVVTFR DLTRGTAPKA VECDLLYVRD FNPNTSQCWL PMLEGYKRTR TWVQIGHCNF ## ESYGPHVMKK QLFGDFSYVP FVGYGSDVLA LPETDEILEY DTSPFERFVH AVQRLNPKGE ## SVWTHLGPDV AFAEMSIDAF NAVRESSPSP MSACMMDKTA VPQSLSEMVA DYDWDHNEAL ## RETPYVSSAC AAMSRLTSSD PSLVVAVHEP KLQKYLEQFT GAKVVTYGKM LDSRMVPKRV ## VIFQAHPING CKSGRKLMHM WRSMPGKPKI TVIKPRQEWS AYYCNPLKRV GL ## // ## ID 060L_IIV6 Reviewed; 236 AA. ## AC O55704; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-JUN-1998, sequence version 1. ## DT 12-AUG-2020, entry version 46. ## DE RecName: Full=Uncharacterized protein 060L; ## GN ORFNames=IIV6-060L; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; AF303741; AAB94415.1; -; Genomic_DNA. ## DR PIR; T03041; T03041. ## DR RefSeq; NP_149523.1; NC_003038.1. ## DR GeneID; 1733027; -. ## DR KEGG; vg:1733027; -. ## DR Proteomes; UP000001359; Genome. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Membrane; Reference proteome; Transmembrane; Transmembrane helix. ## FT CHAIN 1..236 ## FT /note="Uncharacterized protein 060L" ## FT /id="PRO_0000377973" ## FT TRANSMEM 52..72 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 236 AA; 27197 MW; 12906AC9081131A2 CRC64; ## MSKNKSPLLN ESEKMMSEML PMKVSQSKLN YEEKVYIPTT IRNRKQHCFR RFFPYIALFQ ## IIMLIILLIL YFCFPNLFYS TNFNTNFNTS LLQNNSIETK LNSIPPQNNS QKTEVPIILN ## YTTQKTEVTE PIIINNTTEE IETQTIMIPK STDQTQTIIS AKTTAIISPP ETSETIAQVL ## KNSDKREHDD EELSFTTEME TITTETETSS TIPHLRSLPI KSESSMETTS EETDEE ## // ## ID 061L_FRG3G Reviewed; 60 AA. ## AC Q6GZR4; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 29. ## DE RecName: Full=Uncharacterized protein 061L; ## GN ORFNames=FV3-061L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09721.1; -; Genomic_DNA. ## DR RefSeq; YP_031640.1; NC_005946.1. ## DR GeneID; 2947761; -. ## DR KEGG; vg:2947761; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..60 ## FT /note="Uncharacterized protein 061L" ## FT /id="PRO_0000410568" ## SQ SEQUENCE 60 AA; 7038 MW; 4FAA14B1B802884C CRC64; ## MWRWSNIYRI GTLSRYYRYA EHSKDTTMSI FSGGVLPNTP SLEKSLYYDA FPYGLTCKNS ## // ## ID 061R_IIV6 Reviewed; 155 AA. ## AC O55705; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-JUN-1998, sequence version 1. ## DT 12-AUG-2020, entry version 50. ## DE RecName: Full=Uncharacterized protein 061R; ## GN ORFNames=IIV6-061R; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; AF303741; AAB94416.1; -; Genomic_DNA. ## DR PIR; T03042; T03042. ## DR RefSeq; NP_149524.1; NC_003038.1. ## DR SMR; O55705; -. ## DR PRIDE; O55705; -. ## DR GeneID; 1733053; -. ## DR KEGG; vg:1733053; -. ## DR Proteomes; UP000001359; Genome. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Membrane; Reference proteome; Transmembrane; Transmembrane helix. ## FT CHAIN 1..155 ## FT /note="Uncharacterized protein 061R" ## FT /id="PRO_0000377974" ## FT TRANSMEM 5..25 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 155 AA; 17918 MW; 0A267531EEF01728 CRC64; ## MNDRGIIICV GIAFLIFIFL WAYFKNKKVK TGNYGNYSYY DKLTDRLDAK LGHDSSFMIQ ## HYLDPENCPL YGDLPTLSQL VNLKQNNPSK YEELVNDGTV KRAVNIKALK TWLLLGSSNV ## DKFKHFMNQV NQLNIDKVDM LNLENALKYQ LSKTQ ## // ## ID 062L_IIV3 Reviewed; 232 AA. ## AC Q196Z8; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 23. ## DE RecName: Full=Uncharacterized protein 062L; ## GN ORFNames=IIV3-062L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82092.1; -; Genomic_DNA. ## DR RefSeq; YP_654634.1; NC_008187.1. ## DR GeneID; 4156312; -. ## DR KEGG; vg:4156312; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..232 ## FT /note="Uncharacterized protein 062L" ## FT /id="PRO_0000377956" ## SQ SEQUENCE 232 AA; 26145 MW; 20F8853D572DAFAB CRC64; ## MNPEGENELQ VYLRDGDLRV MALGLRHGLR RGLRRGLRRG LRRTGDLRDG DLRLDGDLRD ## GDLDLLDGDL RDGDLRLDGD LDLLEGDLRD GDLDLLDGDL HRDGDVDRLE GDLRDGDLRL ## DGDFLVLPHT TAWVFLPNSF NFLEVQTLFA PFSYWLHING IVFINSKILF IKSPQLPSYF ## AMALRQCKSS WLGHTSPANR FCIVVQINDQ LGLKNSINSR RSALWSGGTA SC ## // ## ID 062L_IIV6 Reviewed; 179 AA. ## AC O55706; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-JUN-1998, sequence version 1. ## DT 12-AUG-2020, entry version 42. ## DE RecName: Full=Uncharacterized protein 062L; ## DE Flags: Precursor; ## GN ORFNames=IIV6-062L; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## DR EMBL; AF303741; AAB94417.1; -; Genomic_DNA. ## DR PIR; T03043; T03043. ## DR RefSeq; NP_149525.1; NC_003038.1. ## DR GeneID; 1733192; -. ## DR KEGG; vg:1733192; -. ## DR Proteomes; UP000001359; Genome. ## PE 3: Inferred from homology; ## KW Reference proteome; Signal. ## FT SIGNAL 1..26 ## FT /evidence="ECO:0000255" ## FT CHAIN 27..179 ## FT /note="Uncharacterized protein 062L" ## FT /id="PRO_0000377975" ## SQ SEQUENCE 179 AA; 21273 MW; 3FCC5A5EA3584205 CRC64; ## MKKNMILFFG ILKKLLICIL KMEIKCWLTS DIVYFDSELA LTVKQFFMKK NNTILDKIAA ## HCYGLIMQKI SQPVTFKNYI YIWRAVLFAD CTIKTNKTPD TQNIINLSQN ATEEVKIIID ## ELIDCFKNKN NFKEEEYKPN LDLLNSYIKN IKKFITENKT SKFIFDKDWE ILINNIWMN ## // ## ID 064L_IIV3 Reviewed; 280 AA. ## AC Q196Z6; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 23. ## DE RecName: Full=Uncharacterized protein 064L; ## GN ORFNames=IIV3-064L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82094.1; -; Genomic_DNA. ## DR RefSeq; YP_654636.1; NC_008187.1. ## DR SMR; Q196Z6; -. ## DR PRIDE; Q196Z6; -. ## DR GeneID; 4156314; -. ## DR KEGG; vg:4156314; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..280 ## FT /note="Uncharacterized protein 064L" ## FT /id="PRO_0000377957" ## SQ SEQUENCE 280 AA; 32419 MW; 1555A7076C2D2896 CRC64; ## MDAVKHPVSS LAPHRLGKGF YFMVNSKQII KKFYNKSFLE CSATQETSTT PHDRDNMDQA ## KLCSLVFEIF KKQTRLLAHL VLEEAIDLNN DLLFAVIYFN DEAILNSLVR HLYKYKPYYC ## DFTVRAQELD LVVHLDLGHC IDRLKSFIDP DTACFVLCSN LSQLTGLNCL KRVLKHKIIQ ## KSYHLYLLLK TSHKVQQQWP DPVHVVEKYV TKRMVSYALT DNNPLLLAIV LDRLLVKLPT ## DDFAPLIVGI IESNRFKVEC LPTLLQYHNR VKTTTKPIRI ## // ## ID 064R_FRG3G Reviewed; 95 AA. ## AC Q6GZR1; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 60. ## DE RecName: Full=Caspase recruitment domain-containing protein 064R; ## GN ORFNames=FV3-064R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09724.1; -; Genomic_DNA. ## DR RefSeq; YP_031643.1; NC_005946.1. ## DR SMR; Q6GZR1; -. ## DR GeneID; 2947764; -. ## DR KEGG; vg:2947764; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0042981; P:regulation of apoptotic process; IEA:InterPro. ## DR InterPro; IPR001315; CARD. ## DR InterPro; IPR011029; DEATH-like_dom_sf. ## DR Pfam; PF00619; CARD; 1. ## DR SUPFAM; SSF47986; SSF47986; 1. ## DR PROSITE; PS50209; CARD; 1. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..95 ## FT /note="Caspase recruitment domain-containing protein 064R" ## FT /id="PRO_0000410585" ## FT DOMAIN 1..94 ## FT /note="CARD" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00046" ## SQ SEQUENCE 95 AA; 10353 MW; 73DFF01363A54271 CRC64; ## MQNFGAQEMR KGRLAFVRLS KLETLQNLID KMLAERVFNK GEAADILESN DIRADIARAL ## IDSVTKKGDV ACSLFAGAIA RQDVVLADAM GISQV ## // ## ID 065L_FRG3G Reviewed; 54 AA. ## AC Q6GZR0; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 45. ## DE RecName: Full=Putative collagen-like domain-containing protein 065L; ## GN ORFNames=FV3-065L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09725.1; -; Genomic_DNA. ## DR RefSeq; YP_031644.1; NC_005946.1. ## DR GeneID; 2947765; -. ## DR KEGG; vg:2947765; -. ## DR Proteomes; UP000008770; Genome. ## DR InterPro; IPR008160; Collagen. ## DR Pfam; PF01391; Collagen; 1. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..54 ## FT /note="Putative collagen-like domain-containing protein ## FT 065L" ## FT /id="PRO_0000410507" ## FT DOMAIN 7..51 ## FT /note="Collagen-like" ## SQ SEQUENCE 54 AA; 4910 MW; 517FE5AF0EA7F906 CRC64; ## MRGLEAPGAV GPTGPSGAPG SQGPDGDVGG MGPEGPKGDD GPVGPKGPQG AAIF ## // ## ID 065R_IIV6 Reviewed; 55 AA. ## AC Q91G40; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-DEC-2001, sequence version 1. ## DT 12-AUG-2020, entry version 39. ## DE RecName: Full=Uncharacterized protein 065R; ## GN ORFNames=IIV6-065R; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; AF303741; AAK81992.1; -; Genomic_DNA. ## DR RefSeq; NP_149528.1; NC_003038.1. ## DR GeneID; 1733112; -. ## DR KEGG; vg:1733112; -. ## DR Proteomes; UP000001359; Genome. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Membrane; Reference proteome; Transmembrane; Transmembrane helix. ## FT CHAIN 1..55 ## FT /note="Uncharacterized protein 065R" ## FT /id="PRO_0000377976" ## FT TRANSMEM 27..47 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 55 AA; 6698 MW; 030385EB772BE619 CRC64; ## MNIPKTCFQI HNKIQVQNYL IRINLNIFLI YHFSPIYCPY LFLFTVFFNS LINLI ## // ## ID 066L_FRG3G Reviewed; 183 AA. ## AC Q6GZQ9; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 31. ## DE RecName: Full=Uncharacterized protein 066L; ## GN ORFNames=FV3-066L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09726.1; -; Genomic_DNA. ## DR RefSeq; YP_031645.1; NC_005946.1. ## DR GeneID; 2947766; -. ## DR KEGG; vg:2947766; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..183 ## FT /note="Uncharacterized protein 066L" ## FT /id="PRO_0000410536" ## SQ SEQUENCE 183 AA; 20310 MW; E1D2D6C05118B68E CRC64; ## MPFYICSDPD PKRTVRGPRF TVPDPKPPPD PAHPLDDTDN VMTAFPKFKP YGFSVYNPWD ## PIFLSMFGRA GRNGAKGPRG RRRSPRPPGG SSMTPGDDGN QGPRGPGEQR DQPDQMDPLV ## HPVTSVRSGP WERLGLRGRG ESGVLRETLE MWAGQEGLIS RVRDDPRESE VRPVTGVQTV ## WPE ## // ## ID 068R_FRG3G Reviewed; 95 AA. ## AC Q6GZQ7; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 31. ## DE RecName: Full=Putative uncharacterized protein 068R; ## GN ORFNames=FV3-068R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09728.1; -; Genomic_DNA. ## DR RefSeq; YP_031647.1; NC_005946.1. ## DR GeneID; 2947768; -. ## DR KEGG; vg:2947768; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..95 ## FT /note="Putative uncharacterized protein 068R" ## FT /id="PRO_0000410524" ## FT COMPBIAS 75..80 ## FT /note="Poly-Gly" ## SQ SEQUENCE 95 AA; 10264 MW; 55A66BCA60E4ED54 CRC64; ## MWIHFPVRNY IHLSHTILHY PCPDNAGHVC GHRNVSRNGL KDGLGVGVVS GGVDRTVYDR ## DTYPHPIKES DEDLGGGGVG SRERVGPVGG DHCHG ## // ## ID 069L_IIV6 Reviewed; 230 AA. ## AC O55709; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-JUN-1998, sequence version 1. ## DT 12-AUG-2020, entry version 50. ## DE RecName: Full=Putative Bro-N domain-containing protein 069L; ## GN ORFNames=IIV6-069L; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## DR EMBL; AF303741; AAB94420.1; -; Genomic_DNA. ## DR PIR; T03046; T03046. ## DR RefSeq; NP_149532.1; NC_003038.1. ## DR GeneID; 1733404; -. ## DR KEGG; vg:1733404; -. ## DR Proteomes; UP000001359; Genome. ## DR InterPro; IPR003497; BRO_N_domain. ## DR Pfam; PF02498; Bro-N; 1. ## DR PROSITE; PS51750; BRO_N; 1. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..230 ## FT /note="Putative Bro-N domain-containing protein 069L" ## FT /id="PRO_0000377977" ## FT DOMAIN 20..139 ## FT /note="Bro-N" ## FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01086" ## SQ SEQUENCE 230 AA; 26783 MW; FA7EB015FB561986 CRC64; ## MSDKIDNQIV KVENTNNGGL RAIFNLDGVT LDTPIMGTWD KPVFFGKEIA EFLGFKKPKD ## ALQKHVKPKY KTTLSKVLEK KLDTEPVSYN EGKRVLLYKE GVVELIKKTR LVGIENKIDA ## LIEAFELNLN VVHQTKEQEH IGAILKVFTH ERTVTQYKVK NYKIDLYFLD YKVAVECDEF ## GHRDRNGESE REYNIIRELG CTFYRFNPDS KNFCIYQIIG DLVRLLYKDH ## // ## ID 069R_FRG3G Reviewed; 88 AA. ## AC Q6GZQ6; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 34. ## DE RecName: Full=Transmembrane protein 069R; ## GN ORFNames=FV3-069R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## CC -!- SUBCELLULAR LOCATION: Host membrane {ECO:0000305}; Multi-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; AY548484; AAT09729.1; -; Genomic_DNA. ## DR RefSeq; YP_031648.1; NC_005946.1. ## DR GeneID; 2947769; -. ## DR KEGG; vg:2947769; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Host membrane; Membrane; Reference proteome; Transmembrane; ## KW Transmembrane helix. ## FT CHAIN 1..88 ## FT /note="Transmembrane protein 069R" ## FT /id="PRO_0000410525" ## FT TRANSMEM 30..50 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## FT TRANSMEM 67..87 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## SQ SEQUENCE 88 AA; 9326 MW; 8C771A134E994F40 CRC64; ## MERSATLEML NVHKPDARQT GDILSRYANA LWPPALAYAA SVAAGYVFTA GPHGCRCGKA ## MTEAARVGVF LGVLCALYNW MGSGDSFA ## // ## ID 070R_FRG3G Reviewed; 124 AA. ## AC Q6GZQ5; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 31. ## DE RecName: Full=Uncharacterized protein 070R; ## GN ORFNames=FV3-070R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09730.1; -; Genomic_DNA. ## DR RefSeq; YP_031649.1; NC_005946.1. ## DR GeneID; 2947770; -. ## DR KEGG; vg:2947770; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..124 ## FT /note="Uncharacterized protein 070R" ## FT /id="PRO_0000410523" ## SQ SEQUENCE 124 AA; 13371 MW; 5DD06098A99407B7 CRC64; ## MASHYYSKRP ERPSDGELAS IVAEAAARVL SKYGLKVRDP PAFSAAASAS LSRADSDPST ## IPMGMNRRQT AVYFTMKGML ADASARAVVV QPRSVHPAHP STHFNGTSSA VRPSRHYNAP ## GRFR ## // ## ID 071L_IIV6 Reviewed; 129 AA. ## AC O55710; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 01-JUN-1998, sequence version 1. ## DT 12-AUG-2020, entry version 41. ## DE RecName: Full=Uncharacterized protein 071L; ## GN ORFNames=IIV6-071L; ## OS Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus. ## OX NCBI_TaxID=176652; ## OH NCBI_TaxID=6997; Acheta domesticus (House cricket). ## OH NCBI_TaxID=168631; Chilo suppressalis (Asiatic rice borer moth). ## OH NCBI_TaxID=6999; Gryllus bimaculatus (Two-spotted cricket). ## OH NCBI_TaxID=58607; Gryllus campestris. ## OH NCBI_TaxID=7108; Spodoptera frugiperda (Fall armyworm). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=11448171; DOI=10.1006/viro.2001.0963; ## RA Jakob N.J., Mueller K., Bahr U., Darai G.; ## RT "Analysis of the first complete DNA sequence of an invertebrate iridovirus: ## RT coding strategy of the genome of Chilo iridescent virus."; ## RL Virology 286:182-196(2001). ## RN [2] ## RP GENOME REANNOTATION. ## RX PubMed=17239238; DOI=10.1186/1743-422x-4-11; ## RA Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.; ## RT "Comparative genomic analysis of the family Iridoviridae: re-annotating and ## RT defining the core set of iridovirus genes."; ## RL Virol. J. 4:11-11(2007). ## DR EMBL; AF303741; AAB94421.1; -; Genomic_DNA. ## DR PIR; T03047; T03047. ## DR RefSeq; NP_149534.1; NC_003038.1. ## DR GeneID; 1733301; -. ## DR KEGG; vg:1733301; -. ## DR Proteomes; UP000001359; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..129 ## FT /note="Uncharacterized protein 071L" ## FT /id="PRO_0000377978" ## SQ SEQUENCE 129 AA; 14713 MW; A456926CA57B0216 CRC64; ## MSIIEIITDS SINTTTDIGI VNLTQIEPLL CGFITIDTGN VYDLISSACM FMKQFSPYNL ## RLFESSYIEE NTMTFIRVNS ENPAYFVCRV NSLGNDNNEE KIQKIKNNLE INFLYNNIIH ## DESNILIIG ## // ## ID 071R_FRG3G Reviewed; 77 AA. ## AC Q6GZQ4; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 31. ## DE RecName: Full=Uncharacterized protein 071R; ## GN ORFNames=FV3-071R; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09731.1; -; Genomic_DNA. ## DR RefSeq; YP_031650.1; NC_005946.1. ## DR GeneID; 2947771; -. ## DR KEGG; vg:2947771; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..77 ## FT /note="Uncharacterized protein 071R" ## FT /id="PRO_0000410538" ## SQ SEQUENCE 77 AA; 8300 MW; DFFFDD9251FCC77A CRC64; ## MSGFRILDSA GPQGQSSYTW EAKIAQVQHD MVAMINTFNQ QIAGLSGTIM GRLDQSVIPK ## QQPPSSAAAI SESEFED ## // ## ID 072L_FRG3G Reviewed; 238 AA. ## AC Q6GZQ3; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Uncharacterized protein 072L; ## GN ORFNames=FV3-072L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09732.1; -; Genomic_DNA. ## DR RefSeq; YP_031651.1; NC_005946.1. ## DR SMR; Q6GZQ3; -. ## DR GeneID; 2947772; -. ## DR KEGG; vg:2947772; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..238 ## FT /note="Uncharacterized protein 072L" ## FT /id="PRO_0000410554" ## SQ SEQUENCE 238 AA; 26044 MW; 14A37D88E6198C2D CRC64; ## MSLRTSGHPG ALVAAHCRVH KPASIYPLET GSLNGPDPEA VSHRGHATAA RVHPRVVDPL ## AVSRKEDQPV PAFGQGPSDV EASHGHPSLF RVPVGRIQSL YPVPHLGQCR ARSPHDVSHP ## VHRQHVGHVP HSLDYPVCPR DPQGREDVST DDGNLFRDSF YRHIFARVRN VRDVEPADLN ## LIPEFPVASL AATGNSPLVT SLRPDVSGIF WPIWTPRRPR RGGQCLASTS PEGRSLRM ## // ## ID 072L_IIV3 Reviewed; 156 AA. ## AC Q196Y8; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 24. ## DE RecName: Full=Uncharacterized protein 072L; ## GN ORFNames=IIV3-072L; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## DR EMBL; DQ643392; ABF82102.1; -; Genomic_DNA. ## DR RefSeq; YP_654644.1; NC_008187.1. ## DR SMR; Q196Y8; -. ## DR GeneID; 4156283; -. ## DR KEGG; vg:4156283; -. ## DR Proteomes; UP000001358; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..156 ## FT /note="Uncharacterized protein 072L" ## FT /id="PRO_0000377802" ## SQ SEQUENCE 156 AA; 17799 MW; D82E135E731F3E29 CRC64; ## MEDEDDIFEN QPEFLAERNV WARVGGPDIG LGLGGMINLK KSGYTIGEKF KLIAAATIKM ## LNDGMEEDLL SDAALTRMLS LVESDKMPDF QTKNPSAFAM GYVVAIHSNY NTLEIDREKL ## EVIFKLNNEL ESSFFSRIEE RDILRYVRFC LIHKLK ## // ## ID 073L_FRG3G Reviewed; 324 AA. ## AC Q6GZQ2; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 46. ## DE RecName: Full=Uncharacterized protein 073L; ## GN ORFNames=FV3-073L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09733.1; -; Genomic_DNA. ## DR RefSeq; YP_031652.1; NC_005946.1. ## DR GeneID; 2947792; -. ## DR KEGG; vg:2947792; -. ## DR Proteomes; UP000008770; Genome. ## DR GO; GO:0004842; F:ubiquitin-protein transferase activity; IEA:InterPro. ## DR InterPro; IPR031127; E3_UB_ligase_RBR. ## DR InterPro; IPR013087; Znf_C2H2_type. ## DR PANTHER; PTHR11685; PTHR11685; 1. ## DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..324 ## FT /note="Uncharacterized protein 073L" ## FT /id="PRO_0000410502" ## SQ SEQUENCE 324 AA; 36144 MW; B90DBF460A134B93 CRC64; ## MECIYCFETV SAVVPCAGKC DALICVDCFK GSMDALDTFP KCQCGLEYSP NELEPVLPAA ## TLRGLDAKVK QVWDDNIHTV NAVNAQIDDC KKTYLDALPL AASIATQSFL RKALDDYAAK ## ITKTAEEKPV DCPAEFCMGF RVGGKPCSVC GCTECAYCKA LMNIDKPHTC KAEDLESIKA ## MDSNYVKCPE CKKRVEKIDG CNDMTCAYCS TNFNYRTGLK QHGGSHNRIH LTHHQNLLSV ## KFQHSLSPST LDALKRLETT MNVIESPKIY KRYNKKIAYE WISKRNMSTA IRREYGNISK ## EISALTVDDV ELHLVSVLTK FNII ## // ## ID 073R_IIV3 Reviewed; 177 AA. ## AC Q196Y7; ## DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. ## DT 11-JUL-2006, sequence version 1. ## DT 12-AUG-2020, entry version 31. ## DE RecName: Full=Uncharacterized protein 073R; ## GN ORFNames=IIV3-073R; ## OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Betairidovirinae; Chloriridovirus. ## OX NCBI_TaxID=345201; ## OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans). ## OH NCBI_TaxID=42431; Culex territans. ## OH NCBI_TaxID=332058; Culiseta annulata. ## OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito). ## OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus (Black salt marsh mosquito) (Aedes taeniorhynchus). ## OH NCBI_TaxID=7183; Psorophora ferox. ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=16912294; DOI=10.1128/jvi.00464-06; ## RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A., ## RA Kutish G.F., Rock D.L.; ## RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent ## RT virus)."; ## RL J. Virol. 80:8439-8449(2006). ## CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane ## CC protein {ECO:0000305}. ## DR EMBL; DQ643392; ABF82103.1; -; Genomic_DNA. ## DR RefSeq; YP_654645.1; NC_008187.1. ## DR GeneID; 4156284; -. ## DR KEGG; vg:4156284; -. ## DR Proteomes; UP000001358; Genome. ## DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. ## PE 4: Predicted; ## KW Membrane; Reference proteome; Transmembrane; Transmembrane helix. ## FT CHAIN 1..177 ## FT /note="Uncharacterized protein 073R" ## FT /id="PRO_0000377803" ## FT TRANSMEM 141..158 ## FT /note="Helical" ## FT /evidence="ECO:0000255" ## FT COMPBIAS 99..113 ## FT /note="Gln-rich" ## FT COMPBIAS 125..133 ## FT /note="Pro-rich" ## SQ SEQUENCE 177 AA; 19972 MW; 18C0E601FEB11E90 CRC64; ## MDNAPKTFKV DRHKQLVPLN PGLETNFVCS FEIKSLDGKP FQTTIVEQGQ IKPTQYREVD ## DGFISGQLEG DGTPRSYFLV LRAQEPCECT VKIVLSPKQQ VQPHQQTHQQ SQQTHNKTVA ## NSGDPPPPPP SQPNKFLKPK WIVGMVIGVV VLYLLYRYRA QLMDKLNLGS KTPFSKN ## // ## ID 074L_FRG3G Reviewed; 370 AA. ## AC Q6GZQ1; ## DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot. ## DT 19-JUL-2004, sequence version 1. ## DT 12-AUG-2020, entry version 32. ## DE RecName: Full=Uncharacterized protein 074L; ## GN ORFNames=FV3-074L; ## OS Frog virus 3 (isolate Goorha) (FV-3). ## OC Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; ## OC Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus. ## OX NCBI_TaxID=654924; ## OH NCBI_TaxID=30343; Dryophytes versicolor (chameleon treefrog). ## OH NCBI_TaxID=8404; Lithobates pipiens (Northern leopard frog) (Rana pipiens). ## OH NCBI_TaxID=45438; Lithobates sylvaticus (Wood frog) (Rana sylvatica). ## OH NCBI_TaxID=8316; Notophthalmus viridescens (Eastern newt) (Triturus viridescens). ## RN [1] ## RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. ## RX PubMed=15165820; DOI=10.1016/j.virol.2004.02.019; ## RA Tan W.G., Barkman T.J., Gregory Chinchar V., Essani K.; ## RT "Comparative genomic analyses of frog virus 3, type species of the genus ## RT Ranavirus (family Iridoviridae)."; ## RL Virology 323:70-84(2004). ## DR EMBL; AY548484; AAT09734.1; -; Genomic_DNA. ## DR RefSeq; YP_031653.1; NC_005946.1. ## DR PRIDE; Q6GZQ1; -. ## DR GeneID; 2947793; -. ## DR KEGG; vg:2947793; -. ## DR Proteomes; UP000008770; Genome. ## PE 4: Predicted; ## KW Reference proteome. ## FT CHAIN 1..370 ## FT /note="Uncharacterized protein 074L" ## FT /id="PRO_0000410543" ## SQ SEQUENCE 370 AA; 39160 MW; 4C9CE3B6B5293C5B CRC64; ## MVWYKKNAMF DASHIVRKDR GWGAHLEAFQ APHRQSSSPI MLDVGSHGKG GSAVLREPTP ## RPHTPGHAGF RDQFSRAVSL APLTTADNIM AGGTARGVHG MGSGAHKDPP PAPAGMENAY ## SRHREAFRAP EPVATGHSLS RVPVGPVHGS QITPGNLHVY GRAARHLRPT EDIRRTINVN ## GTAPEAARRQ YLAAKSATAA HVGGPYAGAM APSHFAVPAS DRLDMSAGGC PNVLPFRPET ## RHHDCTTASS GERLEVSAGG RRNVLPFRPK TVHHSSTTAS SAERMDVSAG GRRNVLPFRP ## ETVHHSSTTA SSAERMDVSA GARPIRNWTA TPVNRSHPER SLKASTAIGG HHTVSAVPTG ## SAAHVLFGGM ## // ``` --- ```python *handle = open("./files/clase_4/mini_uniprot.dat") *descriptions = [record.description for record in SwissProt.parse(handle)] # for record in SwissProt.parse(handle): # descriptions.append(record.description) descriptions[:5] ``` ``` ## ['RecName: Full=Putative transcription factor 001R;', 'RecName: Full=Uncharacterized protein 002L;', 'RecName: Full=Uncharacterized protein 002R;', 'RecName: Full=Uncharacterized protein 003L;', 'RecName: Full=Uncharacterized protein 3R; Flags: Precursor;'] ``` ```python pprint(descriptions[:5]) ``` ``` ## ['RecName: Full=Putative transcription factor 001R;', ## 'RecName: Full=Uncharacterized protein 002L;', ## 'RecName: Full=Uncharacterized protein 002R;', ## 'RecName: Full=Uncharacterized protein 003L;', ## 'RecName: Full=Uncharacterized protein 3R; Flags: Precursor;'] ``` ```python len(descriptions) ``` ``` ## 108 ``` --- Creamos un **objeto** `SeqRecord` con esta información ```python import Bio.SeqRecord, Bio.Seq help(Bio.SeqRecord.SeqRecord) ``` ``` ## Help on class SeqRecord in module Bio.SeqRecord: ## ## class SeqRecord(builtins.object) ## | SeqRecord(seq, id='<unknown id>', name='<unknown name>', description='<unknown description>', dbxrefs=None, features=None, annotations=None, letter_annotations=None) ## | ## | A SeqRecord object holds a sequence and information about it. ## | ## | Main attributes: ## | - id - Identifier such as a locus tag (string) ## | - seq - The sequence itself (Seq object or similar) ## | ## | Additional attributes: ## | - name - Sequence name, e.g. gene name (string) ## | - description - Additional text (string) ## | - dbxrefs - List of database cross references (list of strings) ## | - features - Any (sub)features defined (list of SeqFeature objects) ## | - annotations - Further information about the whole sequence (dictionary). ## | Most entries are strings, or lists of strings. ## | - letter_annotations - Per letter/symbol annotation (restricted ## | dictionary). This holds Python sequences (lists, strings ## | or tuples) whose length matches that of the sequence. ## | A typical use would be to hold a list of integers ## | representing sequencing quality scores, or a string ## | representing the secondary structure. ## | ## | You will typically use Bio.SeqIO to read in sequences from files as ## | SeqRecord objects. However, you may want to create your own SeqRecord ## | objects directly (see the __init__ method for further details): ## | ## | >>> from Bio.Seq import Seq ## | >>> from Bio.SeqRecord import SeqRecord ## | >>> record = SeqRecord(Seq("MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF"), ## | ... id="YP_025292.1", name="HokC", ## | ... description="toxic membrane protein") ## | >>> print(record) ## | ID: YP_025292.1 ## | Name: HokC ## | Description: toxic membrane protein ## | Number of features: 0 ## | Seq('MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF') ## | ## | If you want to save SeqRecord objects to a sequence file, use Bio.SeqIO ## | for this. For the special case where you want the SeqRecord turned into ## | a string in a particular file format there is a format method which uses ## | Bio.SeqIO internally: ## | ## | >>> print(record.format("fasta")) ## | >YP_025292.1 toxic membrane protein ## | MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF ## | <BLANKLINE> ## | ## | You can also do things like slicing a SeqRecord, checking its length, etc ## | ## | >>> len(record) ## | 44 ## | >>> edited = record[:10] + record[11:] ## | >>> print(edited.seq) ## | MKQHKAMIVAIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF ## | >>> print(record.seq) ## | MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF ## | ## | Methods defined here: ## | ## | __add__(self, other) ## | Add another sequence or string to this sequence. ## | ## | The other sequence can be a SeqRecord object, a Seq object (or ## | similar, e.g. a MutableSeq) or a plain Python string. If you add ## | a plain string or a Seq (like) object, the new SeqRecord will simply ## | have this appended to the existing data. However, any per letter ## | annotation will be lost: ## | ## | >>> from Bio import SeqIO ## | >>> record = SeqIO.read("Quality/solexa_faked.fastq", "fastq-solexa") ## | >>> print("%s %s" % (record.id, record.seq)) ## | slxa_0001_1_0001_01 ACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTNNNNNN ## | >>> print(list(record.letter_annotations)) ## | ['solexa_quality'] ## | ## | >>> new = record + "ACT" ## | >>> print("%s %s" % (new.id, new.seq)) ## | slxa_0001_1_0001_01 ACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTNNNNNNACT ## | >>> print(list(new.letter_annotations)) ## | [] ## | ## | The new record will attempt to combine the annotation, but for any ## | ambiguities (e.g. different names) it defaults to omitting that ## | annotation. ## | ## | >>> from Bio import SeqIO ## | >>> with open("GenBank/pBAD30.gb") as handle: ## | ... plasmid = SeqIO.read(handle, "gb") ## | >>> print("%s %i" % (plasmid.id, len(plasmid))) ## | pBAD30 4923 ## | ## | Now let's cut the plasmid into two pieces, and join them back up the ## | other way round (i.e. shift the starting point on this plasmid, have ## | a look at the annotated features in the original file to see why this ## | particular split point might make sense): ## | ## | >>> left = plasmid[:3765] ## | >>> right = plasmid[3765:] ## | >>> new = right + left ## | >>> print("%s %i" % (new.id, len(new))) ## | pBAD30 4923 ## | >>> str(new.seq) == str(right.seq + left.seq) ## | True ## | >>> len(new.features) == len(left.features) + len(right.features) ## | True ## | ## | When we add the left and right SeqRecord objects, their annotation ## | is all consistent, so it is all conserved in the new SeqRecord: ## | ## | >>> new.id == left.id == right.id == plasmid.id ## | True ## | >>> new.name == left.name == right.name == plasmid.name ## | True ## | >>> new.description == plasmid.description ## | True ## | >>> new.annotations == left.annotations == right.annotations ## | True ## | >>> new.letter_annotations == plasmid.letter_annotations ## | True ## | >>> new.dbxrefs == left.dbxrefs == right.dbxrefs ## | True ## | ## | However, we should point out that when we sliced the SeqRecord, ## | any annotations dictionary or dbxrefs list entries were lost. ## | You can explicitly copy them like this: ## | ## | >>> new.annotations = plasmid.annotations.copy() ## | >>> new.dbxrefs = plasmid.dbxrefs[:] ## | ## | __bool__(self) ## | Boolean value of an instance of this class (True). ## | ## | This behaviour is for backwards compatibility, since until the ## | __len__ method was added, a SeqRecord always evaluated as True. ## | ## | Note that in comparison, a Seq object will evaluate to False if it ## | has a zero length sequence. ## | ## | WARNING: The SeqRecord may in future evaluate to False when its ## | sequence is of zero length (in order to better match the Seq ## | object behaviour)! ## | ## | __contains__(self, char) ## | Implement the 'in' keyword, searches the sequence. ## | ## | e.g. ## | ## | >>> from Bio import SeqIO ## | >>> record = SeqIO.read("Fasta/sweetpea.nu", "fasta") ## | >>> "GAATTC" in record ## | False ## | >>> "AAA" in record ## | True ## | ## | This essentially acts as a proxy for using "in" on the sequence: ## | ## | >>> "GAATTC" in record.seq ## | False ## | >>> "AAA" in record.seq ## | True ## | ## | Note that you can also use Seq objects as the query, ## | ## | >>> from Bio.Seq import Seq ## | >>> Seq("AAA") in record ## | True ## | ## | See also the Seq object's __contains__ method. ## | ## | __eq__(self, other) ## | Define the equal-to operand (not implemented). ## | ## | __format__(self, format_spec) ## | Return the record as a string in the specified file format. ## | ## | This method supports the Python format() function and f-strings. ## | The format_spec should be a lower case string supported by ## | Bio.SeqIO as a text output file format. Requesting a binary file ## | format raises a ValueError. e.g. ## | ## | >>> from Bio.Seq import Seq ## | >>> from Bio.SeqRecord import SeqRecord ## | >>> record = SeqRecord(Seq("MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF"), ## | ... id="YP_025292.1", name="HokC", ## | ... description="toxic membrane protein") ## | ... ## | >>> format(record, "fasta") ## | '>YP_025292.1 toxic membrane protein\nMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF\n' ## | >>> print(f"Here is {record.id} in FASTA format:\n{record:fasta}") ## | Here is YP_025292.1 in FASTA format: ## | >YP_025292.1 toxic membrane protein ## | MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF ## | <BLANKLINE> ## | ## | See also the SeqRecord's format() method. ## | ## | __ge__(self, other) ## | Define the greater-than-or-equal-to operand (not implemented). ## | ## | __getitem__(self, index) ## | Return a sub-sequence or an individual letter. ## | ## | Slicing, e.g. my_record[5:10], returns a new SeqRecord for ## | that sub-sequence with some annotation preserved as follows: ## | ## | * The name, id and description are kept as-is. ## | * Any per-letter-annotations are sliced to match the requested ## | sub-sequence. ## | * Unless a stride is used, all those features which fall fully ## | within the subsequence are included (with their locations ## | adjusted accordingly). If you want to preserve any truncated ## | features (e.g. GenBank/EMBL source features), you must ## | explicitly add them to the new SeqRecord yourself. ## | * With the exception of any molecule type, the annotations ## | dictionary and the dbxrefs list are not used for the new ## | SeqRecord, as in general they may not apply to the ## | subsequence. If you want to preserve them, you must explicitly ## | copy them to the new SeqRecord yourself. ## | ## | Using an integer index, e.g. my_record[5] is shorthand for ## | extracting that letter from the sequence, my_record.seq[5]. ## | ## | For example, consider this short protein and its secondary ## | structure as encoded by the PDB (e.g. H for alpha helices), ## | plus a simple feature for its histidine self phosphorylation ## | site: ## | ## | >>> from Bio.Seq import Seq ## | >>> from Bio.SeqRecord import SeqRecord ## | >>> from Bio.SeqFeature import SeqFeature, FeatureLocation ## | >>> rec = SeqRecord(Seq("MAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLAT" ## | ... "EMMSEQDGYLAESINKDIEECNAIIEQFIDYLR"), ## | ... id="1JOY", name="EnvZ", ## | ... description="Homodimeric domain of EnvZ from E. coli") ## | >>> rec.letter_annotations["secondary_structure"] = " S SSSSSSHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTT " ## | >>> rec.features.append(SeqFeature(FeatureLocation(20, 21), ## | ... type = "Site")) ## | ## | Now let's have a quick look at the full record, ## | ## | >>> print(rec) ## | ID: 1JOY ## | Name: EnvZ ## | Description: Homodimeric domain of EnvZ from E. coli ## | Number of features: 1 ## | Per letter annotation for: secondary_structure ## | Seq('MAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEE...YLR') ## | >>> rec.letter_annotations["secondary_structure"] ## | ' S SSSSSSHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTT ' ## | >>> print(rec.features[0].location) ## | [20:21] ## | ## | Now let's take a sub sequence, here chosen as the first (fractured) ## | alpha helix which includes the histidine phosphorylation site: ## | ## | >>> sub = rec[11:41] ## | >>> print(sub) ## | ID: 1JOY ## | Name: EnvZ ## | Description: Homodimeric domain of EnvZ from E. coli ## | Number of features: 1 ## | Per letter annotation for: secondary_structure ## | Seq('RTLLMAGVSHDLRTPLTRIRLATEMMSEQD') ## | >>> sub.letter_annotations["secondary_structure"] ## | 'HHHHHTTTHHHHHHHHHHHHHHHHHHHHHH' ## | >>> print(sub.features[0].location) ## | [9:10] ## | ## | You can also of course omit the start or end values, for ## | example to get the first ten letters only: ## | ## | >>> print(rec[:10]) ## | ID: 1JOY ## | Name: EnvZ ## | Description: Homodimeric domain of EnvZ from E. coli ## | Number of features: 0 ## | Per letter annotation for: secondary_structure ## | Seq('MAAGVKQLAD') ## | ## | Or for the last ten letters: ## | ## | >>> print(rec[-10:]) ## | ID: 1JOY ## | Name: EnvZ ## | Description: Homodimeric domain of EnvZ from E. coli ## | Number of features: 0 ## | Per letter annotation for: secondary_structure ## | Seq('IIEQFIDYLR') ## | ## | If you omit both, then you get a copy of the original record (although ## | lacking the annotations and dbxrefs): ## | ## | >>> print(rec[:]) ## | ID: 1JOY ## | Name: EnvZ ## | Description: Homodimeric domain of EnvZ from E. coli ## | Number of features: 1 ## | Per letter annotation for: secondary_structure ## | Seq('MAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEE...YLR') ## | ## | Finally, indexing with a simple integer is shorthand for pulling out ## | that letter from the sequence directly: ## | ## | >>> rec[5] ## | 'K' ## | >>> rec.seq[5] ## | 'K' ## | ## | __gt__(self, other) ## | Define the greater-than operand (not implemented). ## | ## | __init__(self, seq, id='<unknown id>', name='<unknown name>', description='<unknown description>', dbxrefs=None, features=None, annotations=None, letter_annotations=None) ## | Create a SeqRecord. ## | ## | Arguments: ## | - seq - Sequence, required (Seq or MutableSeq) ## | - id - Sequence identifier, recommended (string) ## | - name - Sequence name, optional (string) ## | - description - Sequence description, optional (string) ## | - dbxrefs - Database cross references, optional (list of strings) ## | - features - Any (sub)features, optional (list of SeqFeature objects) ## | - annotations - Dictionary of annotations for the whole sequence ## | - letter_annotations - Dictionary of per-letter-annotations, values ## | should be strings, list or tuples of the same length as the full ## | sequence. ## | ## | You will typically use Bio.SeqIO to read in sequences from files as ## | SeqRecord objects. However, you may want to create your own SeqRecord ## | objects directly. ## | ## | Note that while an id is optional, we strongly recommend you supply a ## | unique id string for each record. This is especially important ## | if you wish to write your sequences to a file. ## | ## | You can create a 'blank' SeqRecord object, and then populate the ## | attributes later. ## | ## | __iter__(self) ## | Iterate over the letters in the sequence. ## | ## | For example, using Bio.SeqIO to read in a protein FASTA file: ## | ## | >>> from Bio import SeqIO ## | >>> record = SeqIO.read("Fasta/loveliesbleeding.pro", "fasta") ## | >>> for amino in record: ## | ... print(amino) ## | ... if amino == "L": break ## | X ## | A ## | G ## | L ## | >>> print(record.seq[3]) ## | L ## | ## | This is just a shortcut for iterating over the sequence directly: ## | ## | >>> for amino in record.seq: ## | ... print(amino) ## | ... if amino == "L": break ## | X ## | A ## | G ## | L ## | >>> print(record.seq[3]) ## | L ## | ## | Note that this does not facilitate iteration together with any ## | per-letter-annotation. However, you can achieve that using the ## | python zip function on the record (or its sequence) and the relevant ## | per-letter-annotation: ## | ## | >>> from Bio import SeqIO ## | >>> rec = SeqIO.read("Quality/solexa_faked.fastq", "fastq-solexa") ## | >>> print("%s %s" % (rec.id, rec.seq)) ## | slxa_0001_1_0001_01 ACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTNNNNNN ## | >>> print(list(rec.letter_annotations)) ## | ['solexa_quality'] ## | >>> for nuc, qual in zip(rec, rec.letter_annotations["solexa_quality"]): ## | ... if qual > 35: ## | ... print("%s %i" % (nuc, qual)) ## | A 40 ## | C 39 ## | G 38 ## | T 37 ## | A 36 ## | ## | You may agree that using zip(rec.seq, ...) is more explicit than using ## | zip(rec, ...) as shown above. ## | ## | __le___(self, other) ## | Define the less-than-or-equal-to operand (not implemented). ## | ## | __len__(self) ## | Return the length of the sequence. ## | ## | For example, using Bio.SeqIO to read in a FASTA nucleotide file: ## | ## | >>> from Bio import SeqIO ## | >>> record = SeqIO.read("Fasta/sweetpea.nu", "fasta") ## | >>> len(record) ## | 309 ## | >>> len(record.seq) ## | 309 ## | ## | __lt__(self, other) ## | Define the less-than operand (not implemented). ## | ## | __ne__(self, other) ## | Define the not-equal-to operand (not implemented). ## | ## | __radd__(self, other) ## | Add another sequence or string to this sequence (from the left). ## | ## | This method handles adding a Seq object (or similar, e.g. MutableSeq) ## | or a plain Python string (on the left) to a SeqRecord (on the right). ## | See the __add__ method for more details, but for example: ## | ## | >>> from Bio import SeqIO ## | >>> record = SeqIO.read("Quality/solexa_faked.fastq", "fastq-solexa") ## | >>> print("%s %s" % (record.id, record.seq)) ## | slxa_0001_1_0001_01 ACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTNNNNNN ## | >>> print(list(record.letter_annotations)) ## | ['solexa_quality'] ## | ## | >>> new = "ACT" + record ## | >>> print("%s %s" % (new.id, new.seq)) ## | slxa_0001_1_0001_01 ACTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTNNNNNN ## | >>> print(list(new.letter_annotations)) ## | [] ## | ## | __repr__(self) ## | Return a concise summary of the record for debugging (string). ## | ## | The python built in function repr works by calling the object's ___repr__ ## | method. e.g. ## | ## | >>> from Bio.Seq import Seq ## | >>> from Bio.SeqRecord import SeqRecord ## | >>> rec = SeqRecord(Seq("MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKAT" ## | ... "GEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQ" ## | ... "SGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQ" ## | ... "PQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF"), ## | ... id="NP_418483.1", name="b4059", ## | ... description="ssDNA-binding protein", ## | ... dbxrefs=["ASAP:13298", "GI:16131885", "GeneID:948570"]) ## | >>> print(repr(rec)) ## | SeqRecord(seq=Seq('MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTE...IPF'), id='NP_418483.1', name='b4059', description='ssDNA-binding protein', dbxrefs=['ASAP:13298', 'GI:16131885', 'GeneID:948570']) ## | ## | At the python prompt you can also use this shorthand: ## | ## | >>> rec ## | SeqRecord(seq=Seq('MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTE...IPF'), id='NP_418483.1', name='b4059', description='ssDNA-binding protein', dbxrefs=['ASAP:13298', 'GI:16131885', 'GeneID:948570']) ## | ## | Note that long sequences are shown truncated. Also note that any ## | annotations, letter_annotations and features are not shown (as they ## | would lead to a very long string). ## | ## | __str__(self) ## | Return a human readable summary of the record and its annotation (string). ## | ## | The python built in function str works by calling the object's ___str__ ## | method. e.g. ## | ## | >>> from Bio.Seq import Seq ## | >>> from Bio.SeqRecord import SeqRecord ## | >>> record = SeqRecord(Seq("MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF"), ## | ... id="YP_025292.1", name="HokC", ## | ... description="toxic membrane protein, small") ## | >>> print(str(record)) ## | ID: YP_025292.1 ## | Name: HokC ## | Description: toxic membrane protein, small ## | Number of features: 0 ## | Seq('MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF') ## | ## | In this example you don't actually need to call str explicity, as the ## | print command does this automatically: ## | ## | >>> print(record) ## | ID: YP_025292.1 ## | Name: HokC ## | Description: toxic membrane protein, small ## | Number of features: 0 ## | Seq('MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF') ## | ## | Note that long sequences are shown truncated. ## | ## | format(self, format) ## | Return the record as a string in the specified file format. ## | ## | The format should be a lower case string supported as an output ## | format by Bio.SeqIO, which is used to turn the SeqRecord into a ## | string. e.g. ## | ## | >>> from Bio.Seq import Seq ## | >>> from Bio.SeqRecord import SeqRecord ## | >>> record = SeqRecord(Seq("MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF"), ## | ... id="YP_025292.1", name="HokC", ## | ... description="toxic membrane protein") ## | >>> record.format("fasta") ## | '>YP_025292.1 toxic membrane protein\nMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF\n' ## | >>> print(record.format("fasta")) ## | >YP_025292.1 toxic membrane protein ## | MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF ## | <BLANKLINE> ## | ## | The Python print function automatically appends a new line, meaning ## | in this example a blank line is shown. If you look at the string ## | representation you can see there is a trailing new line (shown as ## | slash n) which is important when writing to a file or if ## | concatenating multiple sequence strings together. ## | ## | Note that this method will NOT work on every possible file format ## | supported by Bio.SeqIO (e.g. some are for multiple sequences only, ## | and binary formats are not supported). ## | ## | lower(self) ## | Return a copy of the record with a lower case sequence. ## | ## | All the annotation is preserved unchanged. e.g. ## | ## | >>> from Bio import SeqIO ## | >>> record = SeqIO.read("Fasta/aster.pro", "fasta") ## | >>> print(record.format("fasta")) ## | >gi|3298468|dbj|BAA31520.1| SAMIPF ## | GGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSTVACLLLKFVTNDMAVGVFSLSAGVG ## | VTNALVFEIVMTFGLVYTVYATAIDPKKGSLGTIAPIAIGFIVGANI ## | <BLANKLINE> ## | >>> print(record.lower().format("fasta")) ## | >gi|3298468|dbj|BAA31520.1| SAMIPF ## | gghvnpavtfgafvggnitllrgivyiiaqllgstvaclllkfvtndmavgvfslsagvg ## | vtnalvfeivmtfglvytvyataidpkkgslgtiapiaigfivgani ## | <BLANKLINE> ## | ## | To take a more annotation rich example, ## | ## | >>> from Bio import SeqIO ## | >>> old = SeqIO.read("EMBL/TRBG361.embl", "embl") ## | >>> len(old.features) ## | 3 ## | >>> new = old.lower() ## | >>> len(old.features) == len(new.features) ## | True ## | >>> old.annotations["organism"] == new.annotations["organism"] ## | True ## | >>> old.dbxrefs == new.dbxrefs ## | True ## | ## | reverse_complement(self, id=False, name=False, description=False, features=True, annotations=False, letter_annotations=True, dbxrefs=False) ## | Return new SeqRecord with reverse complement sequence. ## | ## | By default the new record does NOT preserve the sequence identifier, ## | name, description, general annotation or database cross-references - ## | these are unlikely to apply to the reversed sequence. ## | ## | You can specify the returned record's id, name and description as ## | strings, or True to keep that of the parent, or False for a default. ## | ## | You can specify the returned record's features with a list of ## | SeqFeature objects, or True to keep that of the parent, or False to ## | omit them. The default is to keep the original features (with the ## | strand and locations adjusted). ## | ## | You can also specify both the returned record's annotations and ## | letter_annotations as dictionaries, True to keep that of the parent, ## | or False to omit them. The default is to keep the original ## | annotations (with the letter annotations reversed). ## | ## | To show what happens to the pre-letter annotations, consider an ## | example Solexa variant FASTQ file with a single entry, which we'll ## | read in as a SeqRecord: ## | ## | >>> from Bio import SeqIO ## | >>> record = SeqIO.read("Quality/solexa_faked.fastq", "fastq-solexa") ## | >>> print("%s %s" % (record.id, record.seq)) ## | slxa_0001_1_0001_01 ACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTNNNNNN ## | >>> print(list(record.letter_annotations)) ## | ['solexa_quality'] ## | >>> print(record.letter_annotations["solexa_quality"]) ## | [40, 39, 38, 37, 36, 35, 34, 33, 32, 31, 30, 29, 28, 27, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1, 0, -1, -2, -3, -4, -5] ## | ## | Now take the reverse complement, here we explicitly give a new ## | identifier (the old identifier with a suffix): ## | ## | >>> rc_record = record.reverse_complement(id=record.id + "_rc") ## | >>> print("%s %s" % (rc_record.id, rc_record.seq)) ## | slxa_0001_1_0001_01_rc NNNNNNACGTACGTACGTACGTACGTACGTACGTACGTACGTACGT ## | ## | Notice that the per-letter-annotations have also been reversed, ## | although this may not be appropriate for all cases. ## | ## | >>> print(rc_record.letter_annotations["solexa_quality"]) ## | [-5, -4, -3, -2, -1, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40] ## | ## | Now for the features, we need a different example. Parsing a GenBank ## | file is probably the easiest way to get an nice example with features ## | in it... ## | ## | >>> from Bio import SeqIO ## | >>> with open("GenBank/pBAD30.gb") as handle: ## | ... plasmid = SeqIO.read(handle, "gb") ## | >>> print("%s %i" % (plasmid.id, len(plasmid))) ## | pBAD30 4923 ## | >>> plasmid.seq ## | Seq('GCTAGCGGAGTGTATACTGGCTTACTATGTTGGCACTGATGAGGGTGTCAGTGA...ATG') ## | >>> len(plasmid.features) ## | 13 ## | ## | Now, let's take the reverse complement of this whole plasmid: ## | ## | >>> rc_plasmid = plasmid.reverse_complement(id=plasmid.id+"_rc") ## | >>> print("%s %i" % (rc_plasmid.id, len(rc_plasmid))) ## | pBAD30_rc 4923 ## | >>> rc_plasmid.seq ## | Seq('CATGGGCAAATATTATACGCAAGGCGACAAGGTGCTGATGCCGCTGGCGATTCA...AGC') ## | >>> len(rc_plasmid.features) ## | 13 ## | ## | Let's compare the first CDS feature - it has gone from being the ## | second feature (index 1) to the second last feature (index -2), its ## | strand has changed, and the location switched round. ## | ## | >>> print(plasmid.features[1]) ## | type: CDS ## | location: [1081:1960](-) ## | qualifiers: ## | Key: label, Value: ['araC'] ## | Key: note, Value: ['araC regulator of the arabinose BAD promoter'] ## | Key: vntifkey, Value: ['4'] ## | <BLANKLINE> ## | >>> print(rc_plasmid.features[-2]) ## | type: CDS ## | location: [2963:3842](+) ## | qualifiers: ## | Key: label, Value: ['araC'] ## | Key: note, Value: ['araC regulator of the arabinose BAD promoter'] ## | Key: vntifkey, Value: ['4'] ## | <BLANKLINE> ## | ## | You can check this new location, based on the length of the plasmid: ## | ## | >>> len(plasmid) - 1081 ## | 3842 ## | >>> len(plasmid) - 1960 ## | 2963 ## | ## | Note that if the SeqFeature annotation includes any strand specific ## | information (e.g. base changes for a SNP), this information is not ## | amended, and would need correction after the reverse complement. ## | ## | Note trying to reverse complement a protein SeqRecord raises an ## | exception: ## | ## | >>> from Bio.Seq import Seq ## | >>> from Bio.SeqRecord import SeqRecord ## | >>> protein_rec = SeqRecord(Seq("MAIVMGR"), id="Test", ## | ... annotations={"molecule_type": "protein"}) ## | >>> protein_rec.reverse_complement() ## | Traceback (most recent call last): ## | ... ## | ValueError: Proteins do not have complements! ## | ## | If you have RNA without any U bases, it must be annotated as RNA ## | otherwise it will be treated as DNA by default with A mapped to T: ## | ## | >>> from Bio.Seq import Seq ## | >>> from Bio.SeqRecord import SeqRecord ## | >>> rna1 = SeqRecord(Seq("ACG"), id="Test") ## | >>> rna2 = SeqRecord(Seq("ACG"), id="Test", annotations={"molecule_type": "RNA"}) ## | >>> print(rna1.reverse_complement(id="RC", description="unk").format("fasta")) ## | >RC unk ## | CGT ## | <BLANKLINE> ## | >>> print(rna2.reverse_complement(id="RC", description="RNA").format("fasta")) ## | >RC RNA ## | CGU ## | <BLANKLINE> ## | ## | Also note you can reverse complement a SeqRecord using a MutableSeq: ## | ## | >>> from Bio.Seq import MutableSeq ## | >>> from Bio.SeqRecord import SeqRecord ## | >>> rec = SeqRecord(MutableSeq("ACGT"), id="Test") ## | >>> rec.seq[0] = "T" ## | >>> print("%s %s" % (rec.id, rec.seq)) ## | Test TCGT ## | >>> rc = rec.reverse_complement(id=True) ## | >>> print("%s %s" % (rc.id, rc.seq)) ## | Test ACGA ## | ## | translate(self, table='Standard', stop_symbol='*', to_stop=False, cds=False, gap=None, id=False, name=False, description=False, features=False, annotations=False, letter_annotations=False, dbxrefs=False) ## | Return new SeqRecord with translated sequence. ## | ## | This calls the record's .seq.translate() method (which describes ## | the translation related arguments, like table for the genetic code), ## | ## | By default the new record does NOT preserve the sequence identifier, ## | name, description, general annotation or database cross-references - ## | these are unlikely to apply to the translated sequence. ## | ## | You can specify the returned record's id, name and description as ## | strings, or True to keep that of the parent, or False for a default. ## | ## | You can specify the returned record's features with a list of ## | SeqFeature objects, or False (default) to omit them. ## | ## | You can also specify both the returned record's annotations and ## | letter_annotations as dictionaries, True to keep that of the parent ## | (annotations only), or False (default) to omit them. ## | ## | e.g. Loading a FASTA gene and translating it, ## | ## | >>> from Bio import SeqIO ## | >>> gene_record = SeqIO.read("Fasta/sweetpea.nu", "fasta") ## | >>> print(gene_record.format("fasta")) ## | >gi|3176602|gb|U78617.1|LOU78617 Lathyrus odoratus phytochrome A (PHYA) gene, partial cds ## | CAGGCTGCGCGGTTTCTATTTATGAAGAACAAGGTCCGTATGATAGTTGATTGTCATGCA ## | AAACATGTGAAGGTTCTTCAAGACGAAAAACTCCCATTTGATTTGACTCTGTGCGGTTCG ## | ACCTTAAGAGCTCCACATAGTTGCCATTTGCAGTACATGGCTAACATGGATTCAATTGCT ## | TCATTGGTTATGGCAGTGGTCGTCAATGACAGCGATGAAGATGGAGATAGCCGTGACGCA ## | GTTCTACCACAAAAGAAAAAGAGACTTTGGGGTTTGGTAGTTTGTCATAACACTACTCCG ## | AGGTTTGTT ## | <BLANKLINE> ## | ## | And now translating the record, specifying the new ID and description: ## | ## | >>> protein_record = gene_record.translate(table=11, ## | ... id="phya", ## | ... description="translation") ## | >>> print(protein_record.format("fasta")) ## | >phya translation ## | QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA ## | SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV ## | <BLANKLINE> ## | ## | upper(self) ## | Return a copy of the record with an upper case sequence. ## | ## | All the annotation is preserved unchanged. e.g. ## | ## | >>> from Bio.Seq import Seq ## | >>> from Bio.SeqRecord import SeqRecord ## | >>> record = SeqRecord(Seq("acgtACGT"), id="Test", ## | ... description = "Made up for this example") ## | >>> record.letter_annotations["phred_quality"] = [1, 2, 3, 4, 5, 6, 7, 8] ## | >>> print(record.upper().format("fastq")) ## | @Test Made up for this example ## | ACGTACGT ## | + ## | "#$%&'() ## | <BLANKLINE> ## | ## | Naturally, there is a matching lower method: ## | ## | >>> print(record.lower().format("fastq")) ## | @Test Made up for this example ## | acgtacgt ## | + ## | "#$%&'() ## | <BLANKLINE> ## | ## | ---------------------------------------------------------------------- ## | Data descriptors defined here: ## | ## | __dict__ ## | dictionary for instance variables (if defined) ## | ## | __weakref__ ## | list of weak references to the object (if defined) ## | ## | letter_annotations ## | Dictionary of per-letter-annotation for the sequence. ## | ## | For example, this can hold quality scores used in FASTQ or QUAL files. ## | Consider this example using Bio.SeqIO to read in an example Solexa ## | variant FASTQ file as a SeqRecord: ## | ## | >>> from Bio import SeqIO ## | >>> record = SeqIO.read("Quality/solexa_faked.fastq", "fastq-solexa") ## | >>> print("%s %s" % (record.id, record.seq)) ## | slxa_0001_1_0001_01 ACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTNNNNNN ## | >>> print(list(record.letter_annotations)) ## | ['solexa_quality'] ## | >>> print(record.letter_annotations["solexa_quality"]) ## | [40, 39, 38, 37, 36, 35, 34, 33, 32, 31, 30, 29, 28, 27, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1, 0, -1, -2, -3, -4, -5] ## | ## | The letter_annotations get sliced automatically if you slice the ## | parent SeqRecord, for example taking the last ten bases: ## | ## | >>> sub_record = record[-10:] ## | >>> print("%s %s" % (sub_record.id, sub_record.seq)) ## | slxa_0001_1_0001_01 ACGTNNNNNN ## | >>> print(sub_record.letter_annotations["solexa_quality"]) ## | [4, 3, 2, 1, 0, -1, -2, -3, -4, -5] ## | ## | Any python sequence (i.e. list, tuple or string) can be recorded in ## | the SeqRecord's letter_annotations dictionary as long as the length ## | matches that of the SeqRecord's sequence. e.g. ## | ## | >>> len(sub_record.letter_annotations) ## | 1 ## | >>> sub_record.letter_annotations["dummy"] = "abcdefghij" ## | >>> len(sub_record.letter_annotations) ## | 2 ## | ## | You can delete entries from the letter_annotations dictionary as usual: ## | ## | >>> del sub_record.letter_annotations["solexa_quality"] ## | >>> sub_record.letter_annotations ## | {'dummy': 'abcdefghij'} ## | ## | You can completely clear the dictionary easily as follows: ## | ## | >>> sub_record.letter_annotations = {} ## | >>> sub_record.letter_annotations ## | {} ## | ## | Note that if replacing the record's sequence with a sequence of a ## | different length you must first clear the letter_annotations dict. ## | ## | seq ## | The sequence itself, as a Seq or MutableSeq object. ## | ## | ---------------------------------------------------------------------- ## | Data and other attributes defined here: ## | ## | __hash__ = None ``` --- ```python # Creamos un objeto SeqRecord import Bio.SeqRecord, Bio.Seq seqRec = Bio.SeqRecord.SeqRecord(seq=Bio.Seq.Seq(record.sequence), id=record.entry_name, name=record.organism, description=record.description) pprint(seqRec.__dict__) ``` ``` ## {'_per_letter_annotations': {}, ## '_seq': Seq('MAPAMEEIRQAQRAEGPAAVLAIGTSTPPNALYQADYPDYYFRITKSEHLTELK...GAE'), ## 'annotations': {}, ## 'dbxrefs': [], ## 'description': 'RecName: Full=Chalcone synthase 3; EC=2.3.1.74; AltName: ' ## 'Full=Naringenin-chalcone synthase 3;', ## 'features': [], ## 'id': 'CHS3_BROFI', ## 'name': 'Bromheadia finlaysoniana (Orchid).'} ``` --- Podemos hacer todo lo que ya sabíamos con un **objeto** `SeqRecord` ```python seqRec.format('fasta') ``` ``` ## '>CHS3_BROFI RecName: Full=Chalcone synthase 3; EC=2.3.1.74; AltName: Full=Naringenin-chalcone synthase 3;\nMAPAMEEIRQAQRAEGPAAVLAIGTSTPPNALYQADYPDYYFRITKSEHLTELKEKFKRM\nCDKSMIKKRYMYLTEEILKENPNICAFMAPSLDARQDIVVTEVPKLAKEAAVRAIKEWGH\nPKSRITHLIFCTTSGIDMPGADYQLTRLLGLRPSVNRFMLYQQGCFAGGTVLRLAKDLAE\nNNAGARVLVVCSEITAVTFRGPSESHLDSLVGQALFGDGAAAIIVGSDPDSATERPLFQL\nVSASQTILPESEGAIDGHLREIGLTFHLLKDVPGLISKNIQKCLLDAFKPLGVHDWNSIF\nWIAHPGGPAILDQVEIKLGLKAEKLAASRNVLAEYGNMSSACVLFILDEMRRRSAEAGQA\nTTGEGLEWGVLFGFGPGLTVETIVLRSVPIAGAE\n' ``` ```python print(seqRec.format('fasta')) ``` ``` ## >CHS3_BROFI RecName: Full=Chalcone synthase 3; EC=2.3.1.74; AltName: Full=Naringenin-chalcone synthase 3; ## MAPAMEEIRQAQRAEGPAAVLAIGTSTPPNALYQADYPDYYFRITKSEHLTELKEKFKRM ## CDKSMIKKRYMYLTEEILKENPNICAFMAPSLDARQDIVVTEVPKLAKEAAVRAIKEWGH ## PKSRITHLIFCTTSGIDMPGADYQLTRLLGLRPSVNRFMLYQQGCFAGGTVLRLAKDLAE ## NNAGARVLVVCSEITAVTFRGPSESHLDSLVGQALFGDGAAAIIVGSDPDSATERPLFQL ## VSASQTILPESEGAIDGHLREIGLTFHLLKDVPGLISKNIQKCLLDAFKPLGVHDWNSIF ## WIAHPGGPAILDQVEIKLGLKAEKLAASRNVLAEYGNMSSACVLFILDEMRRRSAEAGQA ## TTGEGLEWGVLFGFGPGLTVETIVLRSVPIAGAE ``` --- Y utilizar `Bio.SeqUtils` ```python from Bio.SeqUtils import seq3, seq1, molecular_weight prot = seqRec.seq # Convertir a código de 3 letras seq3(prot)[0:12] ``` ``` ## 'MetAlaProAla' ``` ```python # Convertir a código de 1 letra seq1( seq3(prot)[0:12] ) ``` ``` ## 'MAPA' ``` ```python molecular_weight(prot, seq_type='protein') ``` ``` ## 42941.0657 ``` --- # <span style="color:Plum">Ejercicio 3</span> #### <span style="color:Orchid">Con el archivo de UniProtKB del gen DEFA del mosquito <i>Aedes aegypti<i>, crear un objeto SeqRecord</span> ```{} import Bio.SeqRecord, Bio.Seq objeto_SeqRecord = ...SeqRecord( seq = objeto_Seq, id = Entry name , name = Organismo , description = Descripción) print(objeto_SeqRecord.metodo_fasta) ``` --- # <span style="color:OrangeRed">Tarea</span> *Opcional: equipos de máximo 3* Creen una función que tome una lista de términos GO y una lista de IDs de UniProt. Una vez cargados los términos GO y los IDs, extraigan los archivos SwissProt de cada ID y busquen los términos GO en estos archivos. Si alguno de los términos GO se encuentra en el archivo, guarden en un archivo lo siguiente: + ID y nombre de la proteína donde se encontró + El término GO encontrado y su definición + El organismo al que pertenece la proteína + Localización subcelular + Un abstract de alguno de los artículos mencionado en el archivo (fuentes de las que se han extraído algunos datos) --- + Input : GO_Terms = ["GO:0046755", "GO:0046761", "GO:0046760", "GO:0039702", "GO:0046765", "GO:0046762"] uniprot_IDs = ["A0A0K2RVI7_9BETC", "A8R4D4_9BETC", "POLG_YEFV1", "POLG_DEN1W", "Q6W352_CVEN9", "D9SV67_CLOC7", "A9KSF7_LACP7", "B8I7R6_RUMCH"] + Output : Archivo con los datos mencionados Ejemplo (pueden tener más parámetros, pero **no** menos): ```{} > prot_filter_by_GO(GO_Terms, uniprot_IDs) # ID Nombre # GO:0039702 P:viral budding via # ... # ... # ... ``` --- <img src="imgs/clase_4/relaciones.png" width="600px" style="display: block; margin: auto;" /> --- <img src="imgs/clase_4/prosite.PNG" width="600px" style="display: block; margin: auto;" /> ¿Hay información de `prosite` en el archivo SwissProt? ```python record.__dict__.keys() ``` ``` ## dict_keys(['entry_name', 'data_class', 'molecule_type', 'sequence_length', 'accessions', 'created', 'sequence_update', 'annotation_update', 'description', 'gene_name', 'organism', 'organelle', 'organism_classification', 'taxonomy_id', 'host_organism', 'host_taxonomy_id', 'references', 'comments', 'cross_references', 'keywords', 'features', 'protein_existence', 'seqinfo', 'sequence']) ``` ```python for reference in record.cross_references: if 'PROSITE' in reference: print(reference) ``` ``` ## ('PROSITE', 'PS00441', 'CHALCONE_SYNTH', '1') ``` --- ```python from Bio import ExPASy from Bio.ExPASy import Prosite handle = ExPASy.get_prosite_raw("PS00785") record = Prosite.read(handle) print (record.name) ``` ``` ## 5_NUCLEOTIDASE_1 ``` ```python print (record.type) # e.g. PATTERN, MATRIX, or RULE ``` ``` ## PATTERN ``` ```python print (record.pattern) ``` ``` ## [LIVM]-x-[LIVM](2)-[HEA]-[TI]-x-D-x-H-[GSA]-x-[LIVMF]. ``` ```python print (record.rules) ``` ``` ## [] ``` ```python print (record.matrix) ``` ``` ## [] ``` ```python documento = record.pdoc documento ``` ``` ## 'PDOC00627' ``` --- ```python from Bio import ExPASy from Bio.ExPASy import Prodoc handle = ExPASy.get_prosite_raw(documento) record = Prodoc.read(handle) record.text ``` ``` ## "******************************\n* 5'-nucleotidase signatures *\n******************************\n\n5'-nucleotidases (EC 3.1.3.5) [1] are enzymes that catalyze the hydrolysis of\nphosphate esterified at carbon 5' of the ribose and deoxyribose portions of\nnucleotide molecules. 5'-nucleotidase is a ubiquitous enzyme found in a wide\nvariety of species and which occurs in different cellular locations. The\nsequences of the following 5'-nucleotidases are currently known:\n\n - Extracellular 5'-nucleotidase from mammals and electric ray. This isozyme\n is a homodimeric disulfide-bonded glycoprotein attached to the membrane by\n a GPI-anchor. It requires zinc for its activity\n - Vibrio parahaemolyticus 5'-nucleotidase (gene nutA). This isozyme is bound\n to the membrane by a lipid chain. NutA requires chloride and magnesium\n ions for its activity. It is involved in degrading extracellular\n 5'-nucleotides for nutritional needs.\n - Periplasmic bacterial 5'-nucleotidase (gene ushA). This enzyme, also known\n as UDP-sugar hydrolase (EC 3.6.1.45), can degrade UDP-glucose and other\n nucleotide diphosphate sugars. It produces sugar-1-phosphate which can\n then be used by the cell. UshA seems to require cobalt for its activity.\n\n5'-nucleotidases are evolutionary related to the following enzyme:\n\n - Periplasmic bacterial 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.\n 4.16) (gene cpdB). This bifunctional enzyme catalyzes two consecutive\n reactions: it first converts 2',3'-cyclic-nucleotide to 3'-nucleotide and\n then acts as a 3'-nucleotidase.\n - Mosquito apyrase (EC 3.6.1.5) (ATP-diphosphohydrolase) [2]. This enzyme\n catalyzes the hydrolysis of ATP into AMP and facilitates hematophagy by\n preventing ADP-dependent platelet aggregation in the host.\n\nAll these proteins share a number of regions of sequence similarity, of which\nwe selected two as signature patterns. Both regions are located in the N-\nterminal section of these enzymes. The second pattern contains a perfectly\nconserved pentapeptide.\n\n-Consensus pattern: [LIVM]-x-[LIVM](2)-[HEA]-[TI]-x-D-x-H-[GSA]-x-[LIVMF]\n-Sequences known to belong to this class detected by the pattern: ALL.\n-Other sequence(s) detected in Swiss-Prot: NONE.\n\n-Consensus pattern: [FYPH]-x(4)-[LIVM]-G-N-H-E-F-[DN]\n-Sequences known to belong to this class detected by the pattern: ALL.\n-Other sequence(s) detected in Swiss-Prot: NONE.\n\n-Last update: December 2004 / Pattern and text revised.\n\n" ``` ```python print(record.text.replace('\\n','\n')) ``` ``` ## ****************************** ## * 5'-nucleotidase signatures * ## ****************************** ## ## 5'-nucleotidases (EC 3.1.3.5) [1] are enzymes that catalyze the hydrolysis of ## phosphate esterified at carbon 5' of the ribose and deoxyribose portions of ## nucleotide molecules. 5'-nucleotidase is a ubiquitous enzyme found in a wide ## variety of species and which occurs in different cellular locations. The ## sequences of the following 5'-nucleotidases are currently known: ## ## - Extracellular 5'-nucleotidase from mammals and electric ray. This isozyme ## is a homodimeric disulfide-bonded glycoprotein attached to the membrane by ## a GPI-anchor. It requires zinc for its activity ## - Vibrio parahaemolyticus 5'-nucleotidase (gene nutA). This isozyme is bound ## to the membrane by a lipid chain. NutA requires chloride and magnesium ## ions for its activity. It is involved in degrading extracellular ## 5'-nucleotides for nutritional needs. ## - Periplasmic bacterial 5'-nucleotidase (gene ushA). This enzyme, also known ## as UDP-sugar hydrolase (EC 3.6.1.45), can degrade UDP-glucose and other ## nucleotide diphosphate sugars. It produces sugar-1-phosphate which can ## then be used by the cell. UshA seems to require cobalt for its activity. ## ## 5'-nucleotidases are evolutionary related to the following enzyme: ## ## - Periplasmic bacterial 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1. ## 4.16) (gene cpdB). This bifunctional enzyme catalyzes two consecutive ## reactions: it first converts 2',3'-cyclic-nucleotide to 3'-nucleotide and ## then acts as a 3'-nucleotidase. ## - Mosquito apyrase (EC 3.6.1.5) (ATP-diphosphohydrolase) [2]. This enzyme ## catalyzes the hydrolysis of ATP into AMP and facilitates hematophagy by ## preventing ADP-dependent platelet aggregation in the host. ## ## All these proteins share a number of regions of sequence similarity, of which ## we selected two as signature patterns. Both regions are located in the N- ## terminal section of these enzymes. The second pattern contains a perfectly ## conserved pentapeptide. ## ## -Consensus pattern: [LIVM]-x-[LIVM](2)-[HEA]-[TI]-x-D-x-H-[GSA]-x-[LIVMF] ## -Sequences known to belong to this class detected by the pattern: ALL. ## -Other sequence(s) detected in Swiss-Prot: NONE. ## ## -Consensus pattern: [FYPH]-x(4)-[LIVM]-G-N-H-E-F-[DN] ## -Sequences known to belong to this class detected by the pattern: ALL. ## -Other sequence(s) detected in Swiss-Prot: NONE. ## ## -Last update: December 2004 / Pattern and text revised. ``` --- ### Scan prosite Permite escanear proteínas en busca de coincidencias con la colección de motivos PROSITE. Puede ser con una secuencia, un ID de PDB, un ID de UniProt, etc ```python sequence = "MEHKEVVLLLLLFLKSGQGEPLDDYVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQYHSKEQQCVIMAENRKSSIIIRMRDVVLFEKKVYLSECKTGNGKNYRGTMSKTKN" from Bio.ExPASy import ScanProsite handle = ScanProsite.scan(seq=sequence) result = ScanProsite.read(handle) type(result) ``` ``` ## <class 'Bio.ExPASy.ScanProsite.Record'> ``` ```python result[0] ``` ``` ## {'sequence_ac': 'USERSEQ1', 'start': 16, 'stop': 98, 'signature_ac': 'PS50948', 'score': '8.873', 'level': '0'} ``` --- ```python from Bio import ExPASy from Bio.ExPASy import Prodoc handle = ExPASy.get_prosite_raw("PS50948") record = Prosite.read(handle) print (record.name) ``` ``` ## PAN ``` ```python handle = ExPASy.get_prosite_raw(record.pdoc) record = Prodoc.read(handle) ``` ---